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Items: 1 to 20 of 116

1.

Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture.

Han Z, Crisp PA, Stelpflug S, Kaeppler SM, Li Q, Springer NM.

Genetics. 2018 Aug;209(4):983-995. doi: 10.1534/genetics.118.300987. Epub 2018 May 30.

PMID:
29848487
2.

Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize.

Stelpflug SC, Eichten SR, Hermanson PJ, Springer NM, Kaeppler SM.

Genetics. 2014 Sep;198(1):209-18. doi: 10.1534/genetics.114.165480. Epub 2014 Jul 14.

3.

Epigenetic variation, inheritance, and parent-of-origin effects of cytosine methylation in maize (Zea mays).

Lauria M, Piccinini S, Pirona R, Lund G, Viotti A, Motto M.

Genetics. 2014 Mar;196(3):653-66. doi: 10.1534/genetics.113.160515. Epub 2013 Dec 27.

4.

Genetic perturbation of the maize methylome.

Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, Vaughn MW, Kaeppler SM, Jeddeloh JA, Springer NM.

Plant Cell. 2014 Dec;26(12):4602-16. doi: 10.1105/tpc.114.133140. Epub 2014 Dec 19.

5.

Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.

Rhee Y, Sekhon RS, Chopra S, Kaeppler S.

Genetics. 2010 Nov;186(3):843-55. doi: 10.1534/genetics.110.117929. Epub 2010 Sep 7.

6.

Heritable epigenetic variation among maize inbreds.

Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.

PLoS Genet. 2011 Nov;7(11):e1002372. doi: 10.1371/journal.pgen.1002372. Epub 2011 Nov 17.

7.

Inheritance patterns and stability of DNA methylation variation in maize near-isogenic lines.

Li Q, Eichten SR, Hermanson PJ, Springer NM.

Genetics. 2014 Mar;196(3):667-76. doi: 10.1534/genetics.113.158980. Epub 2013 Dec 20.

8.

Plants regenerated from tissue culture contain stable epigenome changes in rice.

Stroud H, Ding B, Simon SA, Feng S, Bellizzi M, Pellegrini M, Wang GL, Meyers BC, Jacobsen SE.

Elife. 2013 Mar 19;2:e00354. doi: 10.7554/eLife.00354.

9.

Locus- and Site-Specific DNA Methylation of 19 kDa Zein Genes in Maize.

Xu JH, Wang R, Li X, Miclaus M, Messing J.

PLoS One. 2016 Jan 7;11(1):e0146416. doi: 10.1371/journal.pone.0146416. eCollection 2016.

10.

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize.

Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM.

Plant Physiol. 2015 Aug;168(4):1262-74. doi: 10.1104/pp.15.00052. Epub 2015 Apr 13.

11.

Epigenetic and genetic influences on DNA methylation variation in maize populations.

Eichten SR, Briskine R, Song J, Li Q, Swanson-Wagner R, Hermanson PJ, Waters AJ, Starr E, West PT, Tiffin P, Myers CL, Vaughn MW, Springer NM.

Plant Cell. 2013 Aug;25(8):2783-97. doi: 10.1105/tpc.113.114793. Epub 2013 Aug 6.

12.

Genomic distribution of H3K9me2 and DNA methylation in a maize genome.

West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM.

PLoS One. 2014 Aug 14;9(8):e105267. doi: 10.1371/journal.pone.0105267. eCollection 2014.

13.

Genome-wide high-resolution mapping of DNA methylation identifies epigenetic variation across embryo and endosperm in Maize (Zea may).

Wang P, Xia H, Zhang Y, Zhao S, Zhao C, Hou L, Li C, Li A, Ma C, Wang X.

BMC Genomics. 2015 Jan 23;16:21. doi: 10.1186/s12864-014-1204-7.

14.

Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice.

Ngezahayo F, Xu C, Wang H, Jiang L, Pang J, Liu B.

BMC Plant Biol. 2009 Jul 15;9:91. doi: 10.1186/1471-2229-9-91.

15.

Differential methylation during maize leaf growth targets developmentally regulated genes.

Candaele J, Demuynck K, Mosoti D, Beemster GT, Inzé D, Nelissen H.

Plant Physiol. 2014 Mar;164(3):1350-64. doi: 10.1104/pp.113.233312. Epub 2014 Jan 31.

16.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA.

Genome Res. 2013 Oct;23(10):1651-62. doi: 10.1101/gr.153510.112. Epub 2013 Jun 5.

17.

Analysis of somaclonal variation in transgenic and regenerated plants of Arabidopsis thaliana using methylation related metAFLP and TMD markers.

Coronel CJ, González AI, Ruiz ML, Polanco C.

Plant Cell Rep. 2018 Jan;37(1):137-152. doi: 10.1007/s00299-017-2217-x. Epub 2017 Oct 16.

PMID:
29038910
18.

Integrative analysis of DNA methylation, mRNAs, and small RNAs during maize embryo dedifferentiation.

Liu H, Ma L, Yang X, Zhang L, Zeng X, Xie S, Peng H, Gao S, Lin H, Pan G, Wu Y, Shen Y.

BMC Plant Biol. 2017 Jun 15;17(1):105. doi: 10.1186/s12870-017-1055-x.

19.

Tissue culture-induced genetic and epigenetic alterations in rice pure-lines, F1 hybrids and polyploids.

Wang X, Wu R, Lin X, Bai Y, Song C, Yu X, Xu C, Zhao N, Dong Y, Liu B.

BMC Plant Biol. 2013 May 5;13:77. doi: 10.1186/1471-2229-13-77.

20.

Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids.

He G, Chen B, Wang X, Li X, Li J, He H, Yang M, Lu L, Qi Y, Wang X, Deng XW.

Genome Biol. 2013 Jun 12;14(6):R57. doi: 10.1186/gb-2013-14-6-r57.

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