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Items: 1 to 20 of 82

1.

PhytoNet: comparative co-expression network analyses across phytoplankton and land plants.

Ferrari C, Proost S, Ruprecht C, Mutwil M.

Nucleic Acids Res. 2018 Jul 2;46(W1):W76-W83. doi: 10.1093/nar/gky298.

2.

PlaNet: Comparative Co-Expression Network Analyses for Plants.

Proost S, Mutwil M.

Methods Mol Biol. 2017;1533:213-227.

PMID:
27987173
3.
4.

Effects of solar UV-B radiation on aquatic ecosystems.

Hader DP.

Adv Space Res. 2000;26(12):2029-40. Review.

PMID:
12038489
5.

Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon.

Sibout R, Proost S, Hansen BO, Vaid N, Giorgi FM, Ho-Yue-Kuang S, Legée F, Cézart L, Bouchabké-Coussa O, Soulhat C, Provart N, Pasha A, Le Bris P, Roujol D, Hofte H, Jamet E, Lapierre C, Persson S, Mutwil M.

New Phytol. 2017 Aug;215(3):1009-1025. doi: 10.1111/nph.14635. Epub 2017 Jun 15.

6.

The role of UV-B radiation in aquatic and terrestrial ecosystems--an experimental and functional analysis of the evolution of UV-absorbing compounds.

Rozema J, Björn LO, Bornman JF, Gaberscik A, Häder DP, Trost T, Germ M, Klisch M, Gröniger A, Sinha RP, Lebert M, He YY, Buffoni-Hall R, de Bakker NV, van de Staaij J, Meijkamp BB.

J Photochem Photobiol B. 2002 Feb;66(1):2-12.

PMID:
11849977
7.

ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage.

Romero-Campero FJ, Perez-Hurtado I, Lucas-Reina E, Romero JM, Valverde F.

BMC Genomics. 2016 Mar 12;17:227. doi: 10.1186/s12864-016-2564-y.

8.

CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses.

Proost S, Mutwil M.

Nucleic Acids Res. 2018 Jul 2;46(W1):W133-W140. doi: 10.1093/nar/gky336.

9.

Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: from transcription to PSII repair.

Mulo P, Sakurai I, Aro EM.

Biochim Biophys Acta. 2012 Jan;1817(1):247-57. doi: 10.1016/j.bbabio.2011.04.011. Epub 2011 May 2. Review.

10.

Genomic insights into photosynthesis in eukaryotic phytoplankton.

Finazzi G, Moreau H, Bowler C.

Trends Plant Sci. 2010 Oct;15(10):565-72. doi: 10.1016/j.tplants.2010.07.004. Epub 2010 Aug 26. Review.

PMID:
20800533
11.
12.

Globally Important Haptophyte Algae Use Exogenous Pyrimidine Compounds More Efficiently than Thiamin.

Gutowska MA, Shome B, Sudek S, McRose DL, Hamilton M, Giovannoni SJ, Begley TP, Worden AZ.

MBio. 2017 Oct 10;8(5). pii: e01459-17. doi: 10.1128/mBio.01459-17.

13.

Ostreococcus tauri is a new model green alga for studying iron metabolism in eukaryotic phytoplankton.

Lelandais G, Scheiber I, Paz-Yepes J, Lozano JC, Botebol H, Pilátová J, Žárský V, Léger T, Blaiseau PL, Bowler C, Bouget FY, Camadro JM, Sutak R, Lesuisse E.

BMC Genomics. 2016 May 3;17:319. doi: 10.1186/s12864-016-2666-6.

14.

Elucidating gene function and function evolution through comparison of co-expression networks of plants.

Hansen BO, Vaid N, Musialak-Lange M, Janowski M, Mutwil M.

Front Plant Sci. 2014 Aug 19;5:394. doi: 10.3389/fpls.2014.00394. eCollection 2014. Review.

16.

Transcription factors in microalgae: genome-wide prediction and comparative analysis.

Thiriet-Rupert S, Carrier G, Chénais B, Trottier C, Bougaran G, Cadoret JP, Schoefs B, Saint-Jean B.

BMC Genomics. 2016 Apr 11;17:282. doi: 10.1186/s12864-016-2610-9.

17.
18.

Genome-based examination of chlorophyll and carotenoid biosynthesis in Chlamydomonas reinhardtii.

Lohr M, Im CS, Grossman AR.

Plant Physiol. 2005 May;138(1):490-515. Epub 2005 Apr 22.

19.

Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii.

Labadorf A, Link A, Rogers MF, Thomas J, Reddy AS, Ben-Hur A.

BMC Genomics. 2010 Feb 17;11:114. doi: 10.1186/1471-2164-11-114.

20.

Genome analysis and its significance in four unicellular algae, Cyanidioschyzon [corrected] merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana.

Misumi O, Yoshida Y, Nishida K, Fujiwara T, Sakajiri T, Hirooka S, Nishimura Y, Kuroiwa T.

J Plant Res. 2008 Jan;121(1):3-17. Epub 2007 Dec 12. Review. Erratum in: J Plant Res. 2008 Mar;121(2):251.

PMID:
18074102

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