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Items: 1 to 20 of 110

1.

Transition Manifolds of Complex Metastable Systems: Theory and Data-Driven Computation of Effective Dynamics.

Bittracher A, Koltai P, Klus S, Banisch R, Dellnitz M, Schütte C.

J Nonlinear Sci. 2018;28(2):471-512. doi: 10.1007/s00332-017-9415-0. Epub 2017 Oct 12.

2.

Data-driven computation of molecular reaction coordinates.

Bittracher A, Banisch R, Schütte C.

J Chem Phys. 2018 Oct 21;149(15):154103. doi: 10.1063/1.5035183.

PMID:
30342463
3.

Effective dynamics along given reaction coordinates, and reaction rate theory.

Zhang W, Hartmann C, Schütte C.

Faraday Discuss. 2016 Dec 22;195:365-394. doi: 10.1039/c6fd00147e.

PMID:
27722497
4.

Low-dimensional manifolds in tropospheric chemical systems.

Tomlin AS, Whitehouse L, Lowe R, Pilling MJ.

Faraday Discuss. 2001;(120):125-46; discussion 197-213.

PMID:
11901671
6.

Local coordinates alignment with global preservation for dimensionality reduction.

Chen J, Ma Z, Liu Y.

IEEE Trans Neural Netw Learn Syst. 2013 Jan;24(1):106-17. doi: 10.1109/TNNLS.2012.2225844.

PMID:
24808211
7.

Metastability in an open quantum Ising model.

Rose DC, Macieszczak K, Lesanovsky I, Garrahan JP.

Phys Rev E. 2016 Nov;94(5-1):052132. Epub 2016 Nov 18.

PMID:
27967090
8.

Exact dynamical coarse-graining without time-scale separation.

Lu J, Vanden-Eijnden E.

J Chem Phys. 2014 Jul 28;141(4):044109. doi: 10.1063/1.4890367.

PMID:
25084883
9.

Coarse-graining errors and numerical optimization using a relative entropy framework.

Chaimovich A, Shell MS.

J Chem Phys. 2011 Mar 7;134(9):094112. doi: 10.1063/1.3557038.

PMID:
21384955
10.

Reaction coordinates, one-dimensional Smoluchowski equations, and a test for dynamical self-consistency.

Peters B, Bolhuis PG, Mullen RG, Shea JE.

J Chem Phys. 2013 Feb 7;138(5):054106. doi: 10.1063/1.4775807.

PMID:
23406097
11.

Projected metastable Markov processes and their estimation with observable operator models.

Wu H, Prinz JH, Noé F.

J Chem Phys. 2015 Oct 14;143(14):144101. doi: 10.1063/1.4932406.

PMID:
26472357
12.

Approximation of slow attracting manifolds in chemical kinetics by trajectory-based optimization approaches.

Reinhardt V, Winckler M, Lebiedz D.

J Phys Chem A. 2008 Feb 28;112(8):1712-8. doi: 10.1021/jp0739925. Epub 2008 Feb 2.

PMID:
18247506
13.

[Dynamic paradigm in psychopathology: "chaos theory", from physics to psychiatry].

Pezard L, Nandrino JL.

Encephale. 2001 May-Jun;27(3):260-8. French.

PMID:
11488256
14.

Deep learning for universal linear embeddings of nonlinear dynamics.

Lusch B, Kutz JN, Brunton SL.

Nat Commun. 2018 Nov 23;9(1):4950. doi: 10.1038/s41467-018-07210-0.

15.

Towards a Theory of Metastability in Open Quantum Dynamics.

Macieszczak K, Guţă M, Lesanovsky I, Garrahan JP.

Phys Rev Lett. 2016 Jun 17;116(24):240404. doi: 10.1103/PhysRevLett.116.240404. Epub 2016 Jun 16.

PMID:
27367368
16.

Phase space conduits for reaction in multidimensional systems: HCN isomerization in three dimensions.

Waalkens H, Burbanks A, Wiggins S.

J Chem Phys. 2004 Oct 1;121(13):6207-25.

PMID:
15446914
17.

Saddle Slow Manifolds and Canard Orbits in [Formula: see text] and Application to the Full Hodgkin-Huxley Model.

Hasan CR, Krauskopf B, Osinga HM.

J Math Neurosci. 2018 Apr 19;8(1):5. doi: 10.1186/s13408-018-0060-1.

18.

Dynamical coring of Markov state models.

Nagel D, Weber A, Lickert B, Stock G.

J Chem Phys. 2019 Mar 7;150(9):094111. doi: 10.1063/1.5081767.

PMID:
30849879
19.

Computing the Free Energy without Collective Variables.

Rodriguez A, d'Errico M, Facco E, Laio A.

J Chem Theory Comput. 2018 Mar 13;14(3):1206-1215. doi: 10.1021/acs.jctc.7b00916. Epub 2018 Feb 19.

PMID:
29401379
20.

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