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Items: 1 to 20 of 100

1.

Extensive Genetic Diversity is Present within North American Switchgrass Germplasm.

Evans J, Sanciangco MD, Lau KH, Crisovan E, Barry K, Daum C, Hundley H, Jenkins J, Kennedy M, Kunde-Ramamoorthy G, Vaillancourt B, Acharya A, Schmutz J, Saha M, Kaeppler SM, Brummer EC, Casler MD, Buell CR.

Plant Genome. 2018 Mar;11(1). doi: 10.3835/plantgenome2017.06.0055.

2.

Diversity and population structure of northern switchgrass as revealed through exome capture sequencing.

Evans J, Crisovan E, Barry K, Daum C, Jenkins J, Kunde-Ramamoorthy G, Nandety A, Ngan CY, Vaillancourt B, Wei CL, Schmutz J, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2015 Nov;84(4):800-15. doi: 10.1111/tpj.13041.

3.

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2014 Sep;79(6):993-1008. doi: 10.1111/tpj.12601. Epub 2014 Aug 11.

4.

Switchgrass (Panicum virgatum L.) Genotypes Differ between Coastal Sites and Inland Road Corridors in the Northeastern US.

Ecker G, Zalapa J, Auer C.

PLoS One. 2015 Jun 30;10(6):e0130414. doi: 10.1371/journal.pone.0130414. eCollection 2015.

5.

Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass.

Grabowski PP, Morris GP, Casler MD, Borevitz JO.

Mol Ecol. 2014 Aug;23(16):4059-73. doi: 10.1111/mec.12845. Epub 2014 Jul 21.

6.

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.).

Bahri BA, Daverdin G, Xu X, Cheng JF, Barry KW, Brummer EC, Devos KM.

BMC Evol Biol. 2018 Jun 14;18(1):91. doi: 10.1186/s12862-018-1193-2.

7.

Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars.

Zalapa JE, Price DL, Kaeppler SM, Tobias CM, Okada M, Casler MD.

Theor Appl Genet. 2011 Mar;122(4):805-17. doi: 10.1007/s00122-010-1488-1. Epub 2010 Nov 23.

PMID:
21104398
8.

Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences.

Zhang Y, Zalapa JE, Jakubowski AR, Price DL, Acharya A, Wei Y, Brummer EC, Kaeppler SM, Casler MD.

Genetica. 2011 Jul;139(7):933-48. doi: 10.1007/s10709-011-9597-6. Epub 2011 Jul 23.

PMID:
21786028
9.

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE.

PLoS One. 2012;7(9):e44112. doi: 10.1371/journal.pone.0044112. Epub 2012 Sep 25.

10.

Switchgrass genomic diversity, ploidy, and evolution: novel insights from a network-based SNP discovery protocol.

Lu F, Lipka AE, Glaubitz J, Elshire R, Cherney JH, Casler MD, Buckler ES, Costich DE.

PLoS Genet. 2013;9(1):e1003215. doi: 10.1371/journal.pgen.1003215. Epub 2013 Jan 17.

11.

Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency.

Serba DD, Uppalapati SR, Krom N, Mukherjee S, Tang Y, Mysore KS, Saha MC.

BMC Genomics. 2016 Dec 16;17(1):1040.

12.

Chloroplast genome variation in upland and lowland switchgrass.

Young HA, Lanzatella CL, Sarath G, Tobias CM.

PLoS One. 2011;6(8):e23980. doi: 10.1371/journal.pone.0023980. Epub 2011 Aug 24.

13.

Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape.

Morris GP, Grabowski PP, Borevitz JO.

Mol Ecol. 2011 Dec;20(23):4938-52. doi: 10.1111/j.1365-294X.2011.05335.x. Epub 2011 Nov 8.

14.

Genetic diversity in tetraploid switchgrass revealed by AFLP marker polymorphisms.

Todd J, Wu YQ, Wang Z, Samuels T.

Genet Mol Res. 2011 Nov 29;10(4):2976-86. doi: 10.4238/2011.November.29.8.

15.

Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass.

Ayyappan V, Saha MC, Thimmapuram J, Sripathi VR, Bhide KP, Fiedler E, Hayford RK, Kalavacharla VK.

Plant Cell Rep. 2017 Jan;36(1):129-150. doi: 10.1007/s00299-016-2065-0. Epub 2016 Nov 3.

16.

Isolation and diversity analysis of resistance gene homologues from switchgrass.

Zhu Q, Bennetzen JL, Smith SM.

G3 (Bethesda). 2013 Jun 21;3(6):1031-42. doi: 10.1534/g3.112.005447.

17.

Genetic variation, population structure and linkage disequilibrium in Switchgrass with ISSR, SCoT and EST-SSR markers.

Zhang Y, Yan H, Jiang X, Wang X, Huang L, Xu B, Zhang X, Zhang L.

Hereditas. 2016 Apr 19;153:4. doi: 10.1186/s41065-016-0007-z. eCollection 2016.

18.

Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches.

Lipka AE, Lu F, Cherney JH, Buckler ES, Casler MD, Costich DE.

PLoS One. 2014 Nov 12;9(11):e112227. doi: 10.1371/journal.pone.0112227. eCollection 2014.

19.

The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum).

Milano ER, Lowry DB, Juenger TE.

G3 (Bethesda). 2016 Nov 8;6(11):3561-3570. doi: 10.1534/g3.116.032763.

20.

Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.

Grabowski PP, Evans J, Daum C, Deshpande S, Barry KW, Kennedy M, Ramstein G, Kaeppler SM, Buell CR, Jiang Y, Casler MD.

New Phytol. 2017 Jan;213(1):154-169. doi: 10.1111/nph.14101. Epub 2016 Jul 22.

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