Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 110

1.

De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.

Schmidt MH, Vogel A, Denton AK, Istace B, Wormit A, van de Geest H, Bolger ME, Alseekh S, Maß J, Pfaff C, Schurr U, Chetelat R, Maumus F, Aury JM, Koren S, Fernie AR, Zamir D, Bolger AM, Usadel B.

Plant Cell. 2017 Oct;29(10):2336-2348. doi: 10.1105/tpc.17.00521. Epub 2017 Oct 12.

2.

Nanopore sequencing and full genome de novo assembly of human cytomegalovirus TB40/E reveals clonal diversity and structural variations.

Karamitros T, van Wilgenburg B, Wills M, Klenerman P, Magiorkinis G.

BMC Genomics. 2018 Aug 2;19(1):577. doi: 10.1186/s12864-018-4949-6.

3.

High precision genome sequencing of engineered Gluconobacter oxydans 621H by combining long nanopore and short accurate Illumina reads.

Kranz A, Vogel A, Degner U, Kiefler I, Bott M, Usadel B, Polen T.

J Biotechnol. 2017 Sep 20;258:197-205. doi: 10.1016/j.jbiotec.2017.04.016. Epub 2017 Apr 19.

PMID:
28433722
4.

Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome.

Goodwin S, Gurtowski J, Ethe-Sayers S, Deshpande P, Schatz MC, McCombie WR.

Genome Res. 2015 Nov;25(11):1750-6. doi: 10.1101/gr.191395.115. Epub 2015 Oct 7.

5.

Genome assembly using Nanopore-guided long and error-free DNA reads.

Madoui MA, Engelen S, Cruaud C, Belser C, Bertrand L, Alberti A, Lemainque A, Wincker P, Aury JM.

BMC Genomics. 2015 Apr 20;16:327. doi: 10.1186/s12864-015-1519-z.

6.

Nanopore sequencing and assembly of a human genome with ultra-long reads.

Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, Tyson JR, Beggs AD, Dilthey AT, Fiddes IT, Malla S, Marriott H, Nieto T, O'Grady J, Olsen HE, Pedersen BS, Rhie A, Richardson H, Quinlan AR, Snutch TP, Tee L, Paten B, Phillippy AM, Simpson JT, Loman NJ, Loose M.

Nat Biotechnol. 2018 Apr;36(4):338-345. doi: 10.1038/nbt.4060. Epub 2018 Jan 29.

7.

Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.

Goldstein S, Beka L, Graf J, Klassen JL.

BMC Genomics. 2019 Jan 9;20(1):23. doi: 10.1186/s12864-018-5381-7.

8.

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.

Cherukuri Y, Janga SC.

BMC Genomics. 2016 Aug 22;17 Suppl 7:507. doi: 10.1186/s12864-016-2895-8.

9.

A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.

Recanati A, Brüls T, d'Aspremont A.

Bioinformatics. 2017 Oct 15;33(20):3188-3194. doi: 10.1093/bioinformatics/btx370.

PMID:
28605450
10.

Oxford Nanopore MinION Sequencing and Genome Assembly.

Lu H, Giordano F, Ning Z.

Genomics Proteomics Bioinformatics. 2016 Oct;14(5):265-279. doi: 10.1016/j.gpb.2016.05.004. Epub 2016 Sep 17. Review.

11.

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly.

Tan MH, Austin CM, Hammer MP, Lee YP, Croft LJ, Gan HM.

Gigascience. 2018 Mar 1;7(3):1-6. doi: 10.1093/gigascience/gix137.

12.

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads.

Sović I, Križanović K, Skala K, Šikić M.

Bioinformatics. 2016 Sep 1;32(17):2582-9. doi: 10.1093/bioinformatics/btw237. Epub 2016 May 9.

PMID:
27162186
13.

MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome.

Tyson JR, O'Neil NJ, Jain M, Olsen HE, Hieter P, Snutch TP.

Genome Res. 2018 Feb;28(2):266-274. doi: 10.1101/gr.221184.117. Epub 2017 Dec 22.

14.

Highly Contiguous Genome Assemblies of 15 Drosophila Species Generated Using Nanopore Sequencing.

Miller DE, Staber C, Zeitlinger J, Hawley RS.

G3 (Bethesda). 2018 Oct 3;8(10):3131-3141. doi: 10.1534/g3.118.200160.

15.

Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.

Ruan J, Jiang L, Chong Z, Gong Q, Li H, Li C, Tao Y, Zheng C, Zhai W, Turissini D, Cannon CH, Lu X, Wu CI.

BMC Genomics. 2013 Oct 17;14:711. doi: 10.1186/1471-2164-14-711.

16.

Improved assembly of noisy long reads by k-mer validation.

Carvalho AB, Dupim EG, Goldstein G.

Genome Res. 2016 Dec;26(12):1710-1720. Epub 2016 Oct 7.

17.

de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer.

Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM.

Gigascience. 2017 Feb 1;6(2):1-13. doi: 10.1093/gigascience/giw018.

18.

Rapid de novo assembly of the European eel genome from nanopore sequencing reads.

Jansen HJ, Liem M, Jong-Raadsen SA, Dufour S, Weltzien FA, Swinkels W, Koelewijn A, Palstra AP, Pelster B, Spaink HP, Thillart GEVD, Dirks RP, Henkel CV.

Sci Rep. 2017 Aug 3;7(1):7213. doi: 10.1038/s41598-017-07650-6.

19.

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing.

Liem M, Jansen HJ, Dirks RP, Henkel CV, van Heusden GPH, Lemmers RJLF, Omer T, Shao S, Punt PJ, Spaink HP.

Version 2. F1000Res. 2017 May 3 [revised 2018 Jan 1];6:618. doi: 10.12688/f1000research.11146.2. eCollection 2017.

20.

The use of Oxford Nanopore native barcoding for complete genome assembly.

Bayliss SC, Hunt VL, Yokoyama M, Thorpe HA, Feil EJ.

Gigascience. 2017 Mar 1;6(3):1-6. doi: 10.1093/gigascience/gix001.

Supplemental Content

Support Center