Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 101

1.

Impact of Alternative Splicing on the Human Proteome.

Liu Y, GonzĂ lez-Porta M, Santos S, Brazma A, Marioni JC, Aebersold R, Venkitaraman AR, Wickramasinghe VO.

Cell Rep. 2017 Aug 1;20(5):1229-1241. doi: 10.1016/j.celrep.2017.07.025.

2.

Incorporating alternative splicing and mRNA editing into the genetic analysis of complex traits.

Hassan MA, Saeij JP.

Bioessays. 2014 Nov;36(11):1032-40. doi: 10.1002/bies.201400079. Epub 2014 Aug 29.

3.

Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).

Schafer S, Miao K, Benson CC, Heinig M, Cook SA, Hubner N.

Curr Protoc Hum Genet. 2015 Oct 6;87:11.16.1-14. doi: 10.1002/0471142905.hg1116s87.

PMID:
26439713
4.

Integrated Analysis of Protein Abundance, Transcript Level, and Tissue Diversity To Reveal Developmental Regulation of Maize.

Jia H, Sun W, Li M, Zhang Z.

J Proteome Res. 2018 Feb 2;17(2):822-833. doi: 10.1021/acs.jproteome.7b00586. Epub 2018 Jan 8.

PMID:
29250956
5.

Diversity of translation start sites may define increased complexity of the human short ORFeome.

Oyama M, Kozuka-Hata H, Suzuki Y, Semba K, Yamamoto T, Sugano S.

Mol Cell Proteomics. 2007 Jun;6(6):1000-6. Epub 2007 Feb 21.

6.

Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.

Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B.

Plant Cell. 2014 Sep;26(9):3472-87. doi: 10.1105/tpc.114.130773. Epub 2014 Sep 23.

7.

Alternative splicing: increasing diversity in the proteomic world.

Graveley BR.

Trends Genet. 2001 Feb;17(2):100-7. Review.

PMID:
11173120
8.

Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry.

Li S, Cao Q, Xiao W, Guo Y, Yang Y, Duan X, Shui W.

J Proteome Res. 2017 Feb 3;16(2):738-747. doi: 10.1021/acs.jproteome.6b00767. Epub 2017 Jan 3.

PMID:
27995803
9.

Global Profiling of the Cellular Alternative RNA Splicing Landscape during Virus-Host Interactions.

Boudreault S, Martenon-Brodeur C, Caron M, Garant JM, Tremblay MP, Armero VE, Durand M, Lapointe E, Thibault P, Tremblay-LĂ©tourneau M, Perreault JP, Scott MS, Lemay G, Bisaillon M.

PLoS One. 2016 Sep 6;11(9):e0161914. doi: 10.1371/journal.pone.0161914. eCollection 2016.

10.

Alternative Splicing May Not Be the Key to Proteome Complexity.

Tress ML, Abascal F, Valencia A.

Trends Biochem Sci. 2017 Feb;42(2):98-110. doi: 10.1016/j.tibs.2016.08.008. Epub 2016 Oct 3. Review.

11.

Plasma proteomics, the Human Proteome Project, and cancer-associated alternative splice variant proteins.

Omenn GS.

Biochim Biophys Acta. 2014 May;1844(5):866-73. doi: 10.1016/j.bbapap.2013.10.016. Epub 2013 Nov 8.

12.

Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.

Filichkin SA, Mockler TC.

Biol Direct. 2012 Jul 2;7:20. doi: 10.1186/1745-6150-7-20.

13.

Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop.

Sterne-Weiler T, Weatheritt RJ, Best AJ, Ha KCH, Blencowe BJ.

Mol Cell. 2018 Oct 4;72(1):187-200.e6. doi: 10.1016/j.molcel.2018.08.018. Epub 2018 Sep 13.

PMID:
30220560
14.

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Zavolan M, Kondo S, Schonbach C, Adachi J, Hume DA, Hayashizaki Y, Gaasterland T; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1290-300.

15.

Diversification of the muscle proteome through alternative splicing.

Nakka K, Ghigna C, Gabellini D, Dilworth FJ.

Skelet Muscle. 2018 Mar 6;8(1):8. doi: 10.1186/s13395-018-0152-3. Review.

16.

Integrative analysis of many RNA-seq datasets to study alternative splicing.

Li W, Dai C, Kang S, Zhou XJ.

Methods. 2014 Jun 1;67(3):313-24. doi: 10.1016/j.ymeth.2014.02.024. Epub 2014 Feb 28.

17.

Genome stability versus transcript diversity.

Magnuson B, Bedi K, Ljungman M.

DNA Repair (Amst). 2016 Aug;44:81-86. doi: 10.1016/j.dnarep.2016.05.010. Epub 2016 May 16. Review.

18.

Polyribosomal RNA-Seq reveals the decreased complexity and diversity of the Arabidopsis translatome.

Zhang X, Rosen BD, Tang H, Krishnakumar V, Town CD.

PLoS One. 2015 Feb 23;10(2):e0117699. doi: 10.1371/journal.pone.0117699. eCollection 2015.

19.

Alternative pre-mRNA splicing and proteome expansion in metazoans.

Maniatis T, Tasic B.

Nature. 2002 Jul 11;418(6894):236-43. Review.

PMID:
12110900
20.

Identifying differential alternative splicing events from RNA sequencing data using RNASeq-MATS.

Park JW, Tokheim C, Shen S, Xing Y.

Methods Mol Biol. 2013;1038:171-9. doi: 10.1007/978-1-62703-514-9_10.

PMID:
23872975

Supplemental Content

Support Center