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Items: 1 to 20 of 91

1.

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, Durel CE, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E.

Nat Genet. 2017 Jul;49(7):1099-1106. doi: 10.1038/ng.3886. Epub 2017 Jun 5.

PMID:
28581499
2.

The genome of the domesticated apple (Malus × domestica Borkh.).

Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R.

Nat Genet. 2010 Oct;42(10):833-9. doi: 10.1038/ng.654. Epub 2010 Aug 29.

PMID:
20802477
3.

Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica).

Li X, Kui L, Zhang J, Xie Y, Wang L, Yan Y, Wang N, Xu J, Li C, Wang W, van Nocker S, Dong Y, Ma F, Guan Q.

Gigascience. 2016 Aug 8;5(1):35. doi: 10.1186/s13742-016-0139-0.

4.

The genome of the pear (Pyrus bretschneideri Rehd.).

Wu J, Wang Z, Shi Z, Zhang S, Ming R, Zhu S, Khan MA, Tao S, Korban SS, Wang H, Chen NJ, Nishio T, Xu X, Cong L, Qi K, Huang X, Wang Y, Zhao X, Wu J, Deng C, Gou C, Zhou W, Yin H, Qin G, Sha Y, Tao Y, Chen H, Yang Y, Song Y, Zhan D, Wang J, Li L, Dai M, Gu C, Wang Y, Shi D, Wang X, Zhang H, Zeng L, Zheng D, Wang C, Chen M, Wang G, Xie L, Sovero V, Sha S, Huang W, Zhang S, Zhang M, Sun J, Xu L, Li Y, Liu X, Li Q, Shen J, Wang J, Paull RE, Bennetzen JL, Wang J, Zhang S.

Genome Res. 2013 Feb;23(2):396-408. doi: 10.1101/gr.144311.112. Epub 2012 Nov 13.

5.

A genome-wide analysis of the expansin genes in Malus × Domestica.

Zhang S, Xu R, Gao Z, Chen C, Jiang Z, Shu H.

Mol Genet Genomics. 2014 Apr;289(2):225-36. doi: 10.1007/s00438-013-0796-y. Epub 2013 Dec 31.

PMID:
24378555
6.

Genome-wide identification and analysis of the SBP-box family genes in apple (Malus × domestica Borkh.).

Li J, Hou H, Li X, Xiang J, Yin X, Gao H, Zheng Y, Bassett CL, Wang X.

Plant Physiol Biochem. 2013 Sep;70:100-14. doi: 10.1016/j.plaphy.2013.05.021. Epub 2013 May 25.

PMID:
23771035
7.

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R.

PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014.

8.

An overview of the apple genome through BAC end sequence analysis.

Han Y, Korban SS.

Plant Mol Biol. 2008 Aug;67(6):581-8. doi: 10.1007/s11103-008-9321-9. Epub 2008 Jun 3.

PMID:
18521706
9.

Insertion of a solo LTR retrotransposon associates with spur mutations in 'Red Delicious' apple (Malus × domestica).

Han M, Sun Q, Zhou J, Qiu H, Guo J, Lu L, Mu W, Sun J.

Plant Cell Rep. 2017 Sep;36(9):1375-1385. doi: 10.1007/s00299-017-2160-x. Epub 2017 Jun 2.

PMID:
28577237
10.

Fast and cost-effective genetic mapping in apple using next-generation sequencing.

Gardner KM, Brown P, Cooke TF, Cann S, Costa F, Bustamante C, Velasco R, Troggio M, Myles S.

G3 (Bethesda). 2014 Jul 16;4(9):1681-7. doi: 10.1534/g3.114.011023.

11.

Four TFL1/CEN-like genes on distinct linkage groups show different expression patterns to regulate vegetative and reproductive development in apple (Malus x domestica Borkh.).

Mimida N, Kotoda N, Ueda T, Igarashi M, Hatsuyama Y, Iwanami H, Moriya S, Abe K.

Plant Cell Physiol. 2009 Feb;50(2):394-412. doi: 10.1093/pcp/pcp001. Epub 2009 Jan 22.

PMID:
19168455
12.
13.

Towards an improved apple reference transcriptome using RNA-seq.

Bai Y, Dougherty L, Xu K.

Mol Genet Genomics. 2014 Jun;289(3):427-38. doi: 10.1007/s00438-014-0819-3. Epub 2014 Feb 16.

PMID:
24532088
14.

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat.

Sehgal SK, Li W, Rabinowicz PD, Chan A, Simková H, Doležel J, Gill BS.

BMC Plant Biol. 2012 May 4;12:64. doi: 10.1186/1471-2229-12-64.

16.

Identification by genome scanning approach (GSA) of a microsatellite tightly associated with the apple scab resistance gene Vm.

Patocchi A, Walser M, Tartarini S, Broggini GA, Gennari F, Sansavini S, Gessler C.

Genome. 2005 Aug;48(4):630-6.

PMID:
16094431
17.

Identification and expression analysis of the IPT and CKX gene families during axillary bud outgrowth in apple (Malus domestica Borkh.).

Tan M, Li G, Qi S, Liu X, Chen X, Ma J, Zhang D, Han M.

Gene. 2018 Apr 20;651:106-117. doi: 10.1016/j.gene.2018.01.101. Epub 2018 Feb 1.

PMID:
29409851
18.

Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis.

Giorno F, Guerriero G, Baric S, Mariani C.

BMC Genomics. 2012 Nov 20;13:639. doi: 10.1186/1471-2164-13-639.

19.

Callose and cellulose synthase gene expression analysis from the tight cluster to the full bloom stage and during early fruit development in Malus × domestica.

Guerriero G, Giorno F, Folgado R, Printz B, Baric S, Hausman JF.

J Plant Res. 2014;127(1):173-83. doi: 10.1007/s10265-013-0586-y. Epub 2013 Aug 11.

PMID:
23934062
20.

Phenotypic and genetic analysis of the German Malus Germplasm Collection in terms of type 1 and type 2 red-fleshed apples.

Würdig J, Flachowsky H, Höfer M, Peil A, Eldin Ali MA, Hanke MV.

Gene. 2014 Jul 10;544(2):198-207. doi: 10.1016/j.gene.2014.04.045. Epub 2014 Apr 24. Erratum in: Gene. 2015 Apr 15;560(2):249.

PMID:
24768720

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