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A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize.

Mei W, Liu S, Schnable JC, Yeh CT, Springer NM, Schnable PS, Barbazuk WB.

Front Plant Sci. 2017 May 10;8:694. doi: 10.3389/fpls.2017.00694. eCollection 2017.


Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.

Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B.

Plant Cell. 2014 Sep;26(9):3472-87. doi: 10.1105/tpc.114.130773. Epub 2014 Sep 23.


Identification of genes alternatively spliced in developing maize endosperm.

Xie S, Zhang X, Zhou Z, Li X, Huang Y, Zhang J, Weng J.

Plant Biol (Stuttg). 2018 Jan;20(1):59-66. doi: 10.1111/plb.12631. Epub 2017 Oct 22.


Transcriptomics and Alternative Splicing Analyses Reveal Large Differences between Maize Lines B73 and Mo17 in Response to Aphid Rhopalosiphum padi Infestation.

Song J, Liu H, Zhuang H, Zhao C, Xu Y, Wu S, Qi J, Li J, Hettenhausen C, Wu J.

Front Plant Sci. 2017 Oct 10;8:1738. doi: 10.3389/fpls.2017.01738. eCollection 2017.


A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing.

Wang B, Regulski M, Tseng E, Olson A, Goodwin S, McCombie WR, Ware D.

Genome Res. 2018 Jun;28(6):921-932. doi: 10.1101/gr.227462.117. Epub 2018 Apr 30.


Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.

Makarevitch I, Stupar RM, Iniguez AL, Haun WJ, Barbazuk WB, Kaeppler SM, Springer NM.

Genetics. 2007 Oct;177(2):749-60. Epub 2007 Jul 29.


Transcriptome Analysis of Flowering Time Genes under Drought Stress in Maize Leaves.

Song K, Kim HC, Shin S, Kim KH, Moon JC, Kim JY, Lee BM.

Front Plant Sci. 2017 Mar 1;8:267. doi: 10.3389/fpls.2017.00267. eCollection 2017.


Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.

Filichkin SA, Mockler TC.

Biol Direct. 2012 Jul 2;7:20. doi: 10.1186/1745-6150-7-20.


Genome-Wide Association Analyses Reveal the Importance of Alternative Splicing in Diversifying Gene Function and Regulating Phenotypic Variation in Maize.

Chen Q, Han Y, Liu H, Wang X, Sun J, Zhao B, Li W, Tian J, Liang Y, Yan J, Yang X, Tian F.

Plant Cell. 2018 Jul;30(7):1404-1423. doi: 10.1105/tpc.18.00109. Epub 2018 Jul 2.


Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines.

Lynch BT, Patrick TL, Moreno JJ, Siebert AE, Klusman KM, Shodja DN, Hannah LC, Lal SK.

G3 (Bethesda). 2015 Jun 12;5(8):1703-11. doi: 10.1534/g3.115.018630.


Identification of Splicing Quantitative Trait Loci (sQTL) in Drosophila melanogaster with Developmental Lead (Pb2+) Exposure.

Qu W, Gurdziel K, Pique-Regi R, Ruden DM.

Front Genet. 2017 Oct 24;8:145. doi: 10.3389/fgene.2017.00145. eCollection 2017.


Genome-Wide Analysis of Alternative Splicing during Development and Drought Stress in Maize.

Thatcher SR, Danilevskaya ON, Meng X, Beatty M, Zastrow-Hayes G, Harris C, Van Allen B, Habben J, Li B.

Plant Physiol. 2016 Jan;170(1):586-99. doi: 10.1104/pp.15.01267. Epub 2015 Nov 18.


Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.

Filichkin SA, Hamilton M, Dharmawardhana PD, Singh SK, Sullivan C, Ben-Hur A, Reddy ASN, Jaiswal P.

Front Plant Sci. 2018 Feb 12;9:5. doi: 10.3389/fpls.2018.00005. eCollection 2018.


Genome-wide survey of Alternative Splicing in Sorghum Bicolor.

Panahi B, Abbaszadeh B, Taghizadeghan M, Ebrahimie E.

Physiol Mol Biol Plants. 2014 Jul;20(3):323-9. doi: 10.1007/s12298-014-0245-3. Epub 2014 Jun 29.


Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.

Mandadi KK, Scholthof KB.

Plant Cell. 2015 Jan;27(1):71-85. doi: 10.1105/tpc.114.133991. Epub 2015 Jan 29.


Genome-wide mapping of alternative splicing in Arabidopsis thaliana.

Filichkin SA, Priest HD, Givan SA, Shen R, Bryant DW, Fox SE, Wong WK, Mockler TC.

Genome Res. 2010 Jan;20(1):45-58. doi: 10.1101/gr.093302.109. Epub 2009 Oct 26.


Maize protein phosphatase gene family: identification and molecular characterization.

Wei K, Pan S.

BMC Genomics. 2014 Sep 9;15:773. doi: 10.1186/1471-2164-15-773.


Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse.

Chacko E, Ranganathan S.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S5. doi: 10.1186/1471-2164-10-S1-S5.


Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.

Gulledge AA, Roberts AD, Vora H, Patel K, Loraine AE.

Am J Bot. 2012 Feb;99(2):219-31. doi: 10.3732/ajb.1100355. Epub 2012 Jan 30.


Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants.

Chuang TJ, Yang MY, Lin CC, Hsieh PH, Hung LY.

BMC Plant Biol. 2015 Feb 5;15:39. doi: 10.1186/s12870-015-0431-7.

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