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Items: 1 to 20 of 102

1.

Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.

Beier S, Himmelbach A, Colmsee C, Zhang XQ, Barrero RA, Zhang Q, Li L, Bayer M, Bolser D, Taudien S, Groth M, Felder M, Hastie A, Šimková H, Staňková H, Vrána J, Chan S, Muñoz-Amatriaín M, Ounit R, Wanamaker S, Schmutzer T, Aliyeva-Schnorr L, Grasso S, Tanskanen J, Sampath D, Heavens D, Cao S, Chapman B, Dai F, Han Y, Li H, Li X, Lin C, McCooke JK, Tan C, Wang S, Yin S, Zhou G, Poland JA, Bellgard MI, Houben A, Doležel J, Ayling S, Lonardi S, Langridge P, Muehlbauer GJ, Kersey P, Clark MD, Caccamo M, Schulman AH, Platzer M, Close TJ, Hansson M, Zhang G, Braumann I, Li C, Waugh R, Scholz U, Stein N, Mascher M.

Sci Data. 2017 Apr 27;4:170044. doi: 10.1038/sdata.2017.44.

2.

Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome.

Muñoz-Amatriaín M, Lonardi S, Luo M, Madishetty K, Svensson JT, Moscou MJ, Wanamaker S, Jiang T, Kleinhofs A, Muehlbauer GJ, Wise RP, Stein N, Ma Y, Rodriguez E, Kudrna D, Bhat PR, Chao S, Condamine P, Heinen S, Resnik J, Wing R, Witt HN, Alpert M, Beccuti M, Bozdag S, Cordero F, Mirebrahim H, Ounit R, Wu Y, You F, Zheng J, Simková H, Dolezel J, Grimwood J, Schmutz J, Duma D, Altschmied L, Blake T, Bregitzer P, Cooper L, Dilbirligi M, Falk A, Feiz L, Graner A, Gustafson P, Hayes PM, Lemaux P, Mammadov J, Close TJ.

Plant J. 2015 Oct;84(1):216-27. doi: 10.1111/tpj.12959. Epub 2015 Sep 21.

3.

Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes.

Beier S, Himmelbach A, Schmutzer T, Felder M, Taudien S, Mayer KF, Platzer M, Stein N, Scholz U, Mascher M.

Plant Biotechnol J. 2016 Jul;14(7):1511-22. doi: 10.1111/pbi.12511. Epub 2016 Jan 23.

4.

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

Schulte D, Ariyadasa R, Shi B, Fleury D, Saski C, Atkins M, deJong P, Wu CC, Graner A, Langridge P, Stein N.

BMC Genomics. 2011 May 19;12:247. doi: 10.1186/1471-2164-12-247.

5.

A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.

Ariyadasa R, Mascher M, Nussbaumer T, Schulte D, Frenkel Z, Poursarebani N, Zhou R, Steuernagel B, Gundlach H, Taudien S, Felder M, Platzer M, Himmelbach A, Schmutzer T, Hedley PE, Muehlbauer GJ, Scholz U, Korol A, Mayer KF, Waugh R, Langridge P, Graner A, Stein N.

Plant Physiol. 2014 Jan;164(1):412-23. doi: 10.1104/pp.113.228213. Epub 2013 Nov 15.

6.

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.

7.

Conserved synteny-based anchoring of the barley genome physical map.

Poursarebani N, Ariyadasa R, Zhou R, Schulte D, Steuernagel B, Martis MM, Graner A, Schweizer P, Scholz U, Mayer K, Stein N.

Funct Integr Genomics. 2013 Aug;13(3):339-50. doi: 10.1007/s10142-013-0327-2. Epub 2013 Jun 28.

PMID:
23812960
8.

Combinatorial pooling enables selective sequencing of the barley gene space.

Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Bhat PR, Wu Y, Ciardo G, Alsaihati B, Ma Y, Wanamaker S, Resnik J, Bozdag S, Luo MC, Close TJ.

PLoS Comput Biol. 2013 Apr;9(4):e1003010. doi: 10.1371/journal.pcbi.1003010. Epub 2013 Apr 4.

9.

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond.

Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, Blattner FR, Scholz U, Mayer KF, Flavell AJ, Muehlbauer GJ, Waugh R, Jeddeloh JA, Stein N.

Plant J. 2013 Nov;76(3):494-505. doi: 10.1111/tpj.12294. Epub 2013 Aug 24.

10.

High-resolution genetic mapping and physical map construction for the fertility restorer Rfm1 locus in barley.

Ui H, Sameri M, Pourkheirandish M, Chang MC, Shimada H, Stein N, Komatsuda T, Handa H.

Theor Appl Genet. 2015 Feb;128(2):283-90. doi: 10.1007/s00122-014-2428-2. Epub 2014 Nov 21.

PMID:
25412992
11.

454 sequencing of pooled BAC clones on chromosome 3H of barley.

Sato K, Motoi Y, Yamaji N, Yoshida H.

BMC Genomics. 2011 May 19;12:246. doi: 10.1186/1471-2164-12-246.

12.

Fine mapping of a malting-quality QTL complex near the chromosome 4H S telomere in barley.

Gao W, Clancy JA, Han F, Jones BL, Budde A, Wesenberg DM, Kleinhofs A, Ullrich SE; North American Barley Genome Project.

Theor Appl Genet. 2004 Aug;109(4):750-60.

PMID:
15164174
13.

Physical mapping of barley genes using an ultrasensitive fluorescence in situ hybridization technique.

Stephens JL, Brown SE, Lapitan NL, Knudson DL.

Genome. 2004 Feb;47(1):179-89.

PMID:
15060614
14.

Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley.

Vu GT, Wicker T, Buchmann JP, Chandler PM, Matsumoto T, Graner A, Stein N.

Funct Integr Genomics. 2010 Nov;10(4):509-21. doi: 10.1007/s10142-010-0173-4. Epub 2010 May 13.

PMID:
20464438
15.

Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare).

Hisano H, Tsujimura M, Yoshida H, Terachi T, Sato K.

BMC Genomics. 2016 Oct 24;17(1):824.

16.

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley.

Chutimanitsakun Y, Nipper RW, Cuesta-Marcos A, Cistué L, Corey A, Filichkina T, Johnson EA, Hayes PM.

BMC Genomics. 2011 Jan 4;12:4. doi: 10.1186/1471-2164-12-4.

17.

Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference.

Phillips D, Wnetrzak J, Nibau C, Barakate A, Ramsay L, Wright F, Higgins JD, Perry RM, Jenkins G.

J Exp Bot. 2013 May;64(8):2139-54. doi: 10.1093/jxb/ert079. Epub 2013 Apr 3.

18.

Genetic and physical mapping of a high recombination region on chromosome 7H(1) in barley.

Drader T, Johnson K, Brueggeman R, Kudrna D, Kleinhofs A.

Theor Appl Genet. 2009 Feb;118(4):811-20. doi: 10.1007/s00122-008-0941-x. Epub 2009 Jan 13.

PMID:
19139841
19.

High-resolution mapping of the barley leaf rust resistance gene Rph5 using barley expressed sequence tags (ESTs) and synteny with rice.

Mammadov JA, Steffenson BJ, Maroof MA.

Theor Appl Genet. 2005 Nov;111(8):1651-60. Epub 2005 Sep 30.

PMID:
16195886
20.

A High-Density, Sequence-Enriched Genetic Map of Hordeum bulbosum and Its Collinearity to H. vulgare.

Wendler N, Mascher M, Himmelbach A, Bini F, Kumlehn J, Stein N.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.06.0049.

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