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Items: 1 to 20 of 145

1.

All roads lead to weediness: Patterns of genomic divergence reveal extensive recurrent weedy rice origins from South Asian Oryza.

Huang Z, Young ND, Reagon M, Hyma KE, Olsen KM, Jia Y, Caicedo AL.

Mol Ecol. 2017 Jun;26(12):3151-3167. doi: 10.1111/mec.14120. Epub 2017 May 5.

PMID:
28345200
2.

The Role of Standing Variation in the Evolution of Weedines Traits in South Asian Weedy Rice (Oryza spp.).

Huang Z, Kelly S, Matsuo R, Li LF, Li Y, Olsen KM, Jia Y, Caicedo AL.

G3 (Bethesda). 2018 Nov 6;8(11):3679-3690. doi: 10.1534/g3.118.200605.

3.

Malaysian weedy rice shows its true stripes: wild Oryza and elite rice cultivars shape agricultural weed evolution in Southeast Asia.

Song BK, Chuah TS, Tam SM, Olsen KM.

Mol Ecol. 2014 Oct;23(20):5003-17. doi: 10.1111/mec.12922. Epub 2014 Oct 13.

PMID:
25231087
4.

More than one way to evolve a weed: parallel evolution of US weedy rice through independent genetic mechanisms.

Qi X, Liu Y, Vigueira CC, Young ND, Caicedo AL, Jia Y, Gealy DR, Olsen KM.

Mol Ecol. 2015 Jul;24(13):3329-44. doi: 10.1111/mec.13256. Epub 2015 Jun 19.

PMID:
26031196
5.

Little White Lies: Pericarp Color Provides Insights into the Origins and Evolution of Southeast Asian Weedy Rice.

Cui Y, Song BK, Li LF, Li YL, Huang Z, Caicedo AL, Jia Y, Olsen KM.

G3 (Bethesda). 2016 Dec 7;6(12):4105-4114. doi: 10.1534/g3.116.035881.

6.

Molecular evolution of shattering loci in U.S. weedy rice.

Thurber CS, Reagon M, Gross BL, Olsen KM, Jia Y, Caicedo AL.

Mol Ecol. 2010 Aug;19(16):3271-84. doi: 10.1111/j.1365-294X.2010.04708.x. Epub 2010 Jun 24.

7.

Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice.

Reagon M, Thurber CS, Gross BL, Olsen KM, Jia Y, Caicedo AL.

BMC Evol Biol. 2010 Jun 15;10:180. doi: 10.1186/1471-2148-10-180.

8.

Contrasting patterns of variation in weedy traits and unique crop features in divergent populations of US weedy rice (Oryza sativa sp.) in Arkansas and California.

Kanapeckas KL, Tseng TM, Vigueira CC, Ortiz A, Bridges WC, Burgos NR, Fischer AJ, Lawton-Rauh A.

Pest Manag Sci. 2018 Jun;74(6):1404-1415. doi: 10.1002/ps.4820. Epub 2018 Mar 5.

9.

Signatures of adaptation in the weedy rice genome.

Li LF, Li YL, Jia Y, Caicedo AL, Olsen KM.

Nat Genet. 2017 May;49(5):811-814. doi: 10.1038/ng.3825. Epub 2017 Apr 3.

PMID:
28369039
10.

The evolution of flowering strategies in US weedy rice.

Thurber CS, Reagon M, Olsen KM, Jia Y, Caicedo AL.

Am J Bot. 2014 Oct;101(10):1737-47. doi: 10.3732/ajb.1400154. Epub 2014 Oct 8.

11.

Conspecific crop-weed introgression influences evolution of weedy rice (Oryza sativa f. spontanea) across a geographical range.

Xia HB, Wang W, Xia H, Zhao W, Lu BR.

PLoS One. 2011 Jan 13;6(1):e16189. doi: 10.1371/journal.pone.0016189.

12.

Call of the wild rice: Oryza rufipogon shapes weedy rice evolution in Southeast Asia.

Vigueira CC, Qi X, Song BK, Li LF, Caicedo AL, Jia Y, Olsen KM.

Evol Appl. 2018 Jan 11;12(1):93-104. doi: 10.1111/eva.12581. eCollection 2019 Jan.

13.

Genomic variation associated with local adaptation of weedy rice during de-domestication.

Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, Timko MP, Ge S, Fan L, Lu Y.

Nat Commun. 2017 May 24;8:15323. doi: 10.1038/ncomms15323.

14.

Similar traits, different genes? Examining convergent evolution in related weedy rice populations.

Thurber CS, Jia MH, Jia Y, Caicedo AL.

Mol Ecol. 2013 Feb;22(3):685-98. doi: 10.1111/mec.12147. Epub 2012 Dec 3.

PMID:
23205731
15.

Cultivated and weedy rice interactions and the domestication process.

Lawton-Rauh A, Burgos N.

Mol Ecol. 2010 Aug;19(16):3243-5. doi: 10.1111/j.1365-294X.2010.04709.x.

PMID:
20701682
16.

Quantitative trait locus and haplotype analyses of wild and crop-mimic traits in U.S. weedy rice.

Mispan MS, Zhang L, Feng J, Gu XY.

G3 (Bethesda). 2013 Jun 21;3(6):1049-59. doi: 10.1534/g3.113.006395.

17.

Allele distributions at hybrid incompatibility loci facilitate the potential for gene flow between cultivated and weedy rice in the US.

Craig SM, Reagon M, Resnick LE, Caicedo AL.

PLoS One. 2014 Jan 28;9(1):e86647. doi: 10.1371/journal.pone.0086647. eCollection 2014.

18.

Molecular evolution of the rice blast resistance gene Pi-ta in invasive weedy rice in the USA.

Lee S, Jia Y, Jia M, Gealy DR, Olsen KM, Caicedo AL.

PLoS One. 2011;6(10):e26260. doi: 10.1371/journal.pone.0026260. Epub 2011 Oct 17.

19.

Seeing red: the origin of grain pigmentation in US weedy rice.

Gross BL, Reagon M, Hsu SC, Caicedo AL, Jia Y, Olsen KM.

Mol Ecol. 2010 Aug;19(16):3380-93. doi: 10.1111/j.1365-294X.2010.04707.x. Epub 2010 Jun 24.

20.

Mapping of seed shattering loci provides insights into origin of weedy rice and rice domestication.

Subudhi PK, Singh PK, DeLeon T, Parco A, Karan R, Biradar H, Cohn MA, Sasaki T.

J Hered. 2014 Mar-Apr;105(2):276-87. doi: 10.1093/jhered/est089. Epub 2013 Dec 11.

PMID:
24336929

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