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Items: 1 to 20 of 107

1.

Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.

Ruprecht C, Proost S, Hernandez-Coronado M, Ortiz-Ramirez C, Lang D, Rensing SA, Becker JD, Vandepoele K, Mutwil M.

Plant J. 2017 May;90(3):447-465. doi: 10.1111/tpj.13502. Epub 2017 Mar 23.

2.

Molecular phylogenetic study and expression analysis of ATP-binding cassette transporter gene family in Oryza sativa in response to salt stress.

Saha J, Sengupta A, Gupta K, Gupta B.

Comput Biol Chem. 2015 Feb;54:18-32. doi: 10.1016/j.compbiolchem.2014.11.005. Epub 2014 Nov 22.

PMID:
25531538
3.

Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.

Ranjan A, Dickopf S, Ullrich KK, Rensing SA, Hoecker U.

BMC Plant Biol. 2014 Jul 1;14:178. doi: 10.1186/1471-2229-14-178.

4.
5.

Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop?

Holm K, Källman T, Gyllenstrand N, Hedman H, Lagercrantz U.

BMC Plant Biol. 2010 Jun 15;10:109. doi: 10.1186/1471-2229-10-109.

6.

Characterization of WRKY co-regulatory networks in rice and Arabidopsis.

Berri S, Abbruscato P, Faivre-Rampant O, Brasileiro AC, Fumasoni I, Satoh K, Kikuchi S, Mizzi L, Morandini P, Pè ME, Piffanelli P.

BMC Plant Biol. 2009 Sep 22;9:120. doi: 10.1186/1471-2229-9-120.

7.

A Transcriptome Atlas of Physcomitrella patens Provides Insights into the Evolution and Development of Land Plants.

Ortiz-Ramírez C, Hernandez-Coronado M, Thamm A, Catarino B, Wang M, Dolan L, Feijó JA, Becker JD.

Mol Plant. 2016 Feb 1;9(2):205-220. doi: 10.1016/j.molp.2015.12.002. Epub 2015 Dec 11.

8.

Acquisition, conservation, and loss of dual-targeted proteins in land plants.

Xu L, Carrie C, Law SR, Murcha MW, Whelan J.

Plant Physiol. 2013 Feb;161(2):644-62. doi: 10.1104/pp.112.210997. Epub 2012 Dec 20.

9.

Genome-wide identification and characterization of tRNA-derived RNA fragments in land plants.

Alves CS, Vicentini R, Duarte GT, Pinoti VF, Vincentz M, Nogueira FT.

Plant Mol Biol. 2017 Jan;93(1-2):35-48. doi: 10.1007/s11103-016-0545-9. Epub 2016 Sep 28.

PMID:
27681945
10.
11.

Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.

Kurotani A, Yamada Y, Shinozaki K, Kuroda Y, Sakurai T.

Plant Cell Physiol. 2015 Jan;56(1):e11. doi: 10.1093/pcp/pcu176. Epub 2014 Nov 29.

12.

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW.

BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61.

13.

The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.

Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T, Perroud PF, Lindquist EA, Kamisugi Y, Tanahashi T, Sakakibara K, Fujita T, Oishi K, Shin-I T, Kuroki Y, Toyoda A, Suzuki Y, Hashimoto S, Yamaguchi K, Sugano S, Kohara Y, Fujiyama A, Anterola A, Aoki S, Ashton N, Barbazuk WB, Barker E, Bennetzen JL, Blankenship R, Cho SH, Dutcher SK, Estelle M, Fawcett JA, Gundlach H, Hanada K, Heyl A, Hicks KA, Hughes J, Lohr M, Mayer K, Melkozernov A, Murata T, Nelson DR, Pils B, Prigge M, Reiss B, Renner T, Rombauts S, Rushton PJ, Sanderfoot A, Schween G, Shiu SH, Stueber K, Theodoulou FL, Tu H, Van de Peer Y, Verrier PJ, Waters E, Wood A, Yang L, Cove D, Cuming AC, Hasebe M, Lucas S, Mishler BD, Reski R, Grigoriev IV, Quatrano RS, Boore JL.

Science. 2008 Jan 4;319(5859):64-9. Epub 2007 Dec 13.

14.

Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.

Obertello M, Shrivastava S, Katari MS, Coruzzi GM.

Plant Physiol. 2015 Aug;168(4):1830-43. doi: 10.1104/pp.114.255877. Epub 2015 Jun 4.

15.

Evolution of GOLDEN2-LIKE gene function in C(3) and C (4) plants.

Wang P, Fouracre J, Kelly S, Karki S, Gowik U, Aubry S, Shaw MK, Westhoff P, Slamet-Loedin IH, Quick WP, Hibberd JM, Langdale JA.

Planta. 2013 Feb;237(2):481-95. doi: 10.1007/s00425-012-1754-3. Epub 2012 Sep 12.

16.

Regulation of the ABA-responsive Em promoter by ABI3 in the moss Physcomitrella patens: role of the ABA response element and the RY element.

Sakata Y, Nakamura I, Taji T, Tanaka S, Quatrano RS.

Plant Signal Behav. 2010 Sep;5(9):1061-6. Epub 2010 Sep 1.

17.

Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.

Liu D, Sun W, Yuan Y, Zhang N, Hayward A, Liu Y, Wang Y.

Ann Bot. 2014 Jun;113(7):1219-33. doi: 10.1093/aob/mcu061. Epub 2014 May 8.

18.

Origin and Functional Prediction of Pollen Allergens in Plants.

Chen M, Xu J, Devis D, Shi J, Ren K, Searle I, Zhang D.

Plant Physiol. 2016 Sep;172(1):341-57. doi: 10.1104/pp.16.00625. Epub 2016 Jul 19.

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20.

Comparative analysis of the SBP-box gene families in P. patens and seed plants.

Riese M, Höhmann S, Saedler H, Münster T, Huijser P.

Gene. 2007 Oct 15;401(1-2):28-37. Epub 2007 Jul 10.

PMID:
17689888

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