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Items: 1 to 20 of 86

1.

Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Garcia V, Bres C, Just D, Fernandez L, Tai FW, Mauxion JP, Le Paslier MC, Bérard A, Brunel D, Aoki K, Alseekh S, Fernie AR, Fraser PD, Rothan C.

Nat Protoc. 2016 Dec;11(12):2401-2418. doi: 10.1038/nprot.2016.143. Epub 2016 Nov 3.

PMID:
27809315
2.

Tomato TILLING technology: development of a reverse genetics tool for the efficient isolation of mutants from Micro-Tom mutant libraries.

Okabe Y, Asamizu E, Saito T, Matsukura C, Ariizumi T, Brès C, Rothan C, Mizoguchi T, Ezura H.

Plant Cell Physiol. 2011 Nov;52(11):1994-2005. doi: 10.1093/pcp/pcr134. Epub 2011 Sep 30.

3.

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato.

Shirasawa K, Hirakawa H, Nunome T, Tabata S, Isobe S.

Plant Biotechnol J. 2016 Jan;14(1):51-60. doi: 10.1111/pbi.12348. Epub 2015 Feb 16.

4.

Genome-wide analysis of intraspecific DNA polymorphism in 'Micro-Tom', a model cultivar of tomato (Solanum lycopersicum).

Kobayashi M, Nagasaki H, Garcia V, Just D, Bres C, Mauxion JP, Le Paslier MC, Brunel D, Suda K, Minakuchi Y, Toyoda A, Fujiyama A, Toyoshima H, Suzuki T, Igarashi K, Rothan C, Kaminuma E, Nakamura Y, Yano K, Aoki K.

Plant Cell Physiol. 2014 Feb;55(2):445-54. doi: 10.1093/pcp/pct181. Epub 2013 Dec 5.

PMID:
24319074
5.

Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics.

Aoki K, Yano K, Suzuki A, Kawamura S, Sakurai N, Suda K, Kurabayashi A, Suzuki T, Tsugane T, Watanabe M, Ooga K, Torii M, Narita T, Shin-I T, Kohara Y, Yamamoto N, Takahashi H, Watanabe Y, Egusa M, Kodama M, Ichinose Y, Kikuchi M, Fukushima S, Okabe A, Arie T, Sato Y, Yazawa K, Satoh S, Omura T, Ezura H, Shibata D.

BMC Genomics. 2010 Mar 30;11:210. doi: 10.1186/1471-2164-11-210.

6.

TOMATOMA Update: Phenotypic and Metabolite Information in the Micro-Tom Mutant Resource.

Shikata M, Hoshikawa K, Ariizumi T, Fukuda N, Yamazaki Y, Ezura H.

Plant Cell Physiol. 2016 Jan;57(1):e11. doi: 10.1093/pcp/pcv194. Epub 2015 Dec 30.

PMID:
26719120
7.

Analyses of tomato fruit brightness mutants uncover both cutin-deficient and cutin-abundant mutants and a new hypomorphic allele of GDSL lipase.

Petit J, Bres C, Just D, Garcia V, Mauxion JP, Marion D, Bakan B, Joubès J, Domergue F, Rothan C.

Plant Physiol. 2014 Feb;164(2):888-906. doi: 10.1104/pp.113.232645. Epub 2013 Dec 19.

8.

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.

Uchida N, Sakamoto T, Kurata T, Tasaka M.

Plant Cell Physiol. 2011 Apr;52(4):716-22. doi: 10.1093/pcp/pcr029. Epub 2011 Mar 11.

PMID:
21398646
9.

Next-Gen Sequencing-Based Mapping and Identification of Ethyl Methanesulfonate-Induced Mutations in Arabidopsis thaliana.

Zhang XC, Millet Y, Ausubel FM, Borowsky M.

Curr Protoc Mol Biol. 2014 Oct 1;108:7.18.1-16. doi: 10.1002/0471142727.mb0718s108.

PMID:
25271717
10.

TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections.

Saito T, Ariizumi T, Okabe Y, Asamizu E, Hiwasa-Tanase K, Fukuda N, Mizoguchi T, Yamazaki Y, Aoki K, Ezura H.

Plant Cell Physiol. 2011 Feb;52(2):283-96. doi: 10.1093/pcp/pcr004. Epub 2011 Jan 21.

11.

Micro-Tom Tomato as an Alternative Plant Model System: Mutant Collection and Efficient Transformation.

Shikata M, Ezura H.

Methods Mol Biol. 2016;1363:47-55. doi: 10.1007/978-1-4939-3115-6_5.

PMID:
26577780
12.

The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis.

Petit J, Bres C, Mauxion JP, Tai FW, Martin LB, Fich EA, Joubès J, Rose JK, Domergue F, Rothan C.

Plant Physiol. 2016 Jun;171(2):894-913. doi: 10.1104/pp.16.00409. Epub 2016 Apr 19.

13.

Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing.

Uchida N, Sakamoto T, Tasaka M, Kurata T.

Methods Mol Biol. 2014;1062:259-70. doi: 10.1007/978-1-62703-580-4_14.

PMID:
24057371
14.

Next-generation sequencing (NGS)-based identification of induced mutations in a doubly mutagenized tomato (Solanum lycopersicum) population.

Gupta P, Reddaiah B, Salava H, Upadhyaya P, Tyagi K, Sarma S, Datta S, Malhotra B, Thomas S, Sunkum A, Devulapalli S, Till BJ, Sreelakshmi Y, Sharma R.

Plant J. 2017 Nov;92(3):495-508. doi: 10.1111/tpj.13654. Epub 2017 Sep 10.

15.

Next-generation sequencing as a tool to quickly identify causative EMS-generated mutations.

Thole JM, Strader LC.

Plant Signal Behav. 2015;10(5):e1000167. doi: 10.1080/15592324.2014.1000167.

16.

Analysis of multiple ethyl methanesulfonate-mutagenized Caenorhabditis elegans strains by whole-genome sequencing.

Sarin S, Bertrand V, Bigelow H, Boyanov A, Doitsidou M, Poole RJ, Narula S, Hobert O.

Genetics. 2010 Jun;185(2):417-30. doi: 10.1534/genetics.110.116319. Epub 2010 May 3.

17.

MutMap+: genetic mapping and mutant identification without crossing in rice.

Fekih R, Takagi H, Tamiru M, Abe A, Natsume S, Yaegashi H, Sharma S, Sharma S, Kanzaki H, Matsumura H, Saitoh H, Mitsuoka C, Utsushi H, Uemura A, Kanzaki E, Kosugi S, Yoshida K, Cano L, Kamoun S, Terauchi R.

PLoS One. 2013 Jul 10;8(7):e68529. doi: 10.1371/journal.pone.0068529. Print 2013.

18.

Tomato mutants as tools for functional genomics.

Emmanuel E, Levy AA.

Curr Opin Plant Biol. 2002 Apr;5(2):112-7. Review.

PMID:
11856605
19.

A novel and efficient strategy for practical identification of tomato (Solanum lycopersicon) varieties using modified RAPD fingerprints.

Korir NK, Li XY, Leng XP, Wu Z, Wang C, Fang JG.

Genet Mol Res. 2013 Jun 11;12(2):1816-28. doi: 10.4238/2013.June.11.2.

20.

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