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Items: 1 to 20 of 127

1.

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA.

Plant Cell. 2016 Nov;28(11):2700-2714. Epub 2016 Nov 1.

2.

Heterosis in early maize ear inflorescence development: a genome-wide transcription analysis for two maize inbred lines and their hybrid.

Ding H, Qin C, Luo X, Li L, Chen Z, Liu H, Gao J, Lin H, Shen Y, Zhao M, Lübberstedt T, Zhang Z, Pan G.

Int J Mol Sci. 2014 Aug 11;15(8):13892-915. doi: 10.3390/ijms150813892.

3.

Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing.

Hansey CN, Vaillancourt B, Sekhon RS, de Leon N, Kaeppler SM, Buell CR.

PLoS One. 2012;7(3):e33071. doi: 10.1371/journal.pone.0033071. Epub 2012 Mar 16.

4.

Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development.

Chen L, Li YX, Li C, Shi Y, Song Y, Zhang D, Li Y, Wang T.

BMC Plant Biol. 2018 Dec 19;18(1):366. doi: 10.1186/s12870-018-1572-2.

5.

Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents.

Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F.

Genome Res. 2012 Dec;22(12):2445-54. doi: 10.1101/gr.138461.112. Epub 2012 Oct 19.

6.

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome.

Ganal MW, Durstewitz G, Polley A, Bérard A, Buckler ES, Charcosset A, Clarke JD, Graner EM, Hansen M, Joets J, Le Paslier MC, McMullen MD, Montalent P, Rose M, Schön CC, Sun Q, Walter H, Martin OC, Falque M.

PLoS One. 2011;6(12):e28334. doi: 10.1371/journal.pone.0028334. Epub 2011 Dec 8.

7.

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize.

Li Q, Song J, West PT, Zynda G, Eichten SR, Vaughn MW, Springer NM.

Plant Physiol. 2015 Aug;168(4):1262-74. doi: 10.1104/pp.15.00052. Epub 2015 Apr 13.

8.

Nonsyntenic Genes Drive Tissue-Specific Dynamics of Differential, Nonadditive, and Allelic Expression Patterns in Maize Hybrids.

Baldauf JA, Marcon C, Paschold A, Hochholdinger F.

Plant Physiol. 2016 Jun;171(2):1144-55. doi: 10.1104/pp.16.00262. Epub 2016 Apr 19.

9.

Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids.

He G, Chen B, Wang X, Li X, Li J, He H, Yang M, Lu L, Qi Y, Wang X, Deng XW.

Genome Biol. 2013 Jun 12;14(6):R57. doi: 10.1186/gb-2013-14-6-r57.

10.

Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.

Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B.

Plant Cell. 2014 Sep;26(9):3472-87. doi: 10.1105/tpc.114.130773. Epub 2014 Sep 23.

11.

Natural variation for gene expression responses to abiotic stress in maize.

Waters AJ, Makarevitch I, Noshay J, Burghardt LT, Hirsch CN, Hirsch CD, Springer NM.

Plant J. 2017 Feb;89(4):706-717. doi: 10.1111/tpj.13414. Epub 2017 Feb 11.

12.

Patterns of genomic variation in Chinese maize inbred lines and implications for genetic improvement.

Zhang R, Xu G, Li J, Yan J, Li H, Yang X.

Theor Appl Genet. 2018 Jun;131(6):1207-1221. doi: 10.1007/s00122-018-3072-z. Epub 2018 Feb 28.

PMID:
29492618
13.

Insights into the maize pan-genome and pan-transcriptome.

Hirsch CN, Foerster JM, Johnson JM, Sekhon RS, Muttoni G, Vaillancourt B, Peñagaricano F, Lindquist E, Pedraza MA, Barry K, de Leon N, Kaeppler SM, Buell CR.

Plant Cell. 2014 Jan;26(1):121-35. doi: 10.1105/tpc.113.119982. Epub 2014 Jan 31.

14.

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL.

PLoS Genet. 2009 Nov;5(11):e1000732. doi: 10.1371/journal.pgen.1000732. Epub 2009 Nov 20.

15.

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines.

Brohammer AB, Kono TJY, Springer NM, McGaugh SE, Hirsch CN.

Plant J. 2018 Jan;93(1):131-141. doi: 10.1111/tpj.13765. Epub 2017 Dec 2.

16.

Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms.

Lu Y, Yan J, Guimarães CT, Taba S, Hao Z, Gao S, Chen S, Li J, Zhang S, Vivek BS, Magorokosho C, Mugo S, Makumbi D, Parentoni SN, Shah T, Rong T, Crouch JH, Xu Y.

Theor Appl Genet. 2009 Dec;120(1):93-115. doi: 10.1007/s00122-009-1162-7. Epub 2009 Oct 11.

PMID:
19823800
17.

A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement.

Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD.

Plant Cell. 2005 Nov;17(11):2859-72. Epub 2005 Oct 14.

18.

Mendelian and non-Mendelian regulation of gene expression in maize.

Li L, Petsch K, Shimizu R, Liu S, Xu WW, Ying K, Yu J, Scanlon MJ, Schnable PS, Timmermans MC, Springer NM, Muehlbauer GJ.

PLoS Genet. 2013;9(1):e1003202. doi: 10.1371/journal.pgen.1003202. Epub 2013 Jan 17. Erratum in: PLoS Genet. 2018 Feb 14;14 (2):e1007234.

19.

Genome-wide identification of housekeeping genes in maize.

Lin F, Jiang L, Liu Y, Lv Y, Dai H, Zhao H.

Plant Mol Biol. 2014 Nov;86(4-5):543-54. doi: 10.1007/s11103-014-0246-1. Epub 2014 Sep 11.

PMID:
25209110
20.

Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype.

Mascher M, Gerlach N, Gahrtz M, Bucher M, Scholz U, Dresselhaus T.

PLoS One. 2014 May 7;9(5):e96782. doi: 10.1371/journal.pone.0096782. eCollection 2014.

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