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Items: 1 to 20 of 90

1.

Genome-wide quantification of rare somatic mutations in normal human tissues using massively parallel sequencing.

Hoang ML, Kinde I, Tomasetti C, McMahon KW, Rosenquist TA, Grollman AP, Kinzler KW, Vogelstein B, Papadopoulos N.

Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9846-51. doi: 10.1073/pnas.1607794113. Epub 2016 Aug 15.

2.

Genome-wide mitochondrial DNA sequence variations and lower expression of OXPHOS genes predict mitochondrial dysfunction in oral cancer tissue.

Chattopadhyay E, De Sarkar N, Singh R, Ray A, Roy R, Paul RR, Pal M, Ghose S, Ghosh S, Kabiraj D, Banerjee R, Roy B.

Tumour Biol. 2016 Sep;37(9):11861-11871. Epub 2016 Apr 7.

PMID:
27055661
3.

Emerging patterns of somatic mutations in cancer.

Watson IR, Takahashi K, Futreal PA, Chin L.

Nat Rev Genet. 2013 Oct;14(10):703-18. doi: 10.1038/nrg3539. Epub 2013 Sep 11. Review.

4.

Comprehensive Mitochondrial Genome Analysis by Massively Parallel Sequencing.

Palculict ME, Zhang VW, Wong LJ, Wang J.

Methods Mol Biol. 2016;1351:3-17. doi: 10.1007/978-1-4939-3040-1_1.

PMID:
26530670
5.

Migration of mitochondrial DNA in the nuclear genome of colorectal adenocarcinoma.

Srinivasainagendra V, Sandel MW, Singh B, Sundaresan A, Mooga VP, Bajpai P, Tiwari HK, Singh KK.

Genome Med. 2017 Mar 29;9(1):31. doi: 10.1186/s13073-017-0420-6.

6.

Next-Generation Sequencing.

Le Gallo M, Lozy F, Bell DW.

Adv Exp Med Biol. 2017;943:119-148. Review.

PMID:
27910067
7.

Mutational profiling in the peripheral blood leukocytes of patients with systemic mast cell activation syndrome using next-generation sequencing.

Altmüller J, Haenisch B, Kawalia A, Menzen M, Nöthen MM, Fier H, Molderings GJ.

Immunogenetics. 2017 Jun;69(6):359-369. doi: 10.1007/s00251-017-0981-y. Epub 2017 Apr 6.

PMID:
28386644
8.

Quantitative detection of low-abundance somatic structural variants in normal cells by high-throughput sequencing.

Quispe-Tintaya W, Gorbacheva T, Lee M, Makhortov S, Popov VN, Vijg J, Maslov AY.

Nat Methods. 2016 Jul;13(7):584-6. doi: 10.1038/nmeth.3893. Epub 2016 Jun 6.

9.

Mutational patterns in the breast cancer mitochondrial genome, with clinical correlates.

McMahon S, LaFramboise T.

Carcinogenesis. 2014 May;35(5):1046-54. doi: 10.1093/carcin/bgu012. Epub 2014 Jan 18.

10.

Comprehensive next-generation sequence analyses of the entire mitochondrial genome reveal new insights into the molecular diagnosis of mitochondrial DNA disorders.

Cui H, Li F, Chen D, Wang G, Truong CK, Enns GM, Graham B, Milone M, Landsverk ML, Wang J, Zhang W, Wong LJ.

Genet Med. 2013 May;15(5):388-94. doi: 10.1038/gim.2012.144. Epub 2013 Jan 3.

PMID:
23288206
11.

Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants.

Gundry M, Vijg J.

Mutat Res. 2012 Jan 3;729(1-2):1-15. doi: 10.1016/mrfmmm.2011.10.001. Epub 2011 Oct 12. Review.

12.

Complete sequence of human mitochondrial DNA obtained by combining multiple displacement amplification and next-generation sequencing on a single oocyte.

Ancora M, Orsini M, Colosimo A, Marcacci M, Russo V, De Santo M, D'Aurora M, Stuppia L, Barboni B, Cammà C, Gatta V.

Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Mar;28(2):180-181. doi: 10.3109/19401736.2015.1115499. Epub 2016 Feb 24.

PMID:
27159691
13.

The development of next-generation sequencing assays for the mitochondrial genome and 108 nuclear genes associated with mitochondrial disorders.

Dames S, Chou LS, Xiao Y, Wayman T, Stocks J, Singleton M, Eilbeck K, Mao R.

J Mol Diagn. 2013 Jul;15(4):526-34. doi: 10.1016/j.jmoldx.2013.03.005. Epub 2013 May 9.

PMID:
23665194
14.

Somatic structural variation and cancer.

Tubio JM.

Brief Funct Genomics. 2015 Sep;14(5):339-51. doi: 10.1093/bfgp/elv016. Epub 2015 Apr 21. Review.

PMID:
25903743
15.

Detection of Ultra-Rare Mitochondrial Mutations in Breast Stem Cells by Duplex Sequencing.

Ahn EH, Hirohata K, Kohrn BF, Fox EJ, Chang CC, Loeb LA.

PLoS One. 2015 Aug 25;10(8):e0136216. doi: 10.1371/journal.pone.0136216. eCollection 2015.

16.

Profiling of potential driver mutations in sarcomas by targeted next generation sequencing.

Andersson C, Fagman H, Hansson M, Enlund F.

Cancer Genet. 2016 Apr;209(4):154-60. doi: 10.1016/j.cancergen.2016.02.004. Epub 2016 Feb 15.

PMID:
26987750
17.

Pitfalls of improperly procured adjacent non-neoplastic tissue for somatic mutation analysis using next-generation sequencing.

Wei L, Papanicolau-Sengos A, Liu S, Wang J, Conroy JM, Glenn ST, Brese E, Hu Q, Miles KM, Burgher B, Qin M, Head K, Omilian AR, Bshara W, Krolewski J, Trump DL, Johnson CS, Morrison CD.

BMC Med Genomics. 2016 Oct 19;9(1):64.

18.

Patient-tailored analysis of minimal residual disease in acute myeloid leukemia using next-generation sequencing.

Malmberg EB, Ståhlman S, Rehammar A, Samuelsson T, Alm SJ, Kristiansson E, Abrahamsson J, Garelius H, Pettersson L, Ehinger M, Palmqvist L, Fogelstrand L.

Eur J Haematol. 2017 Jan;98(1):26-37. doi: 10.1111/ejh.12780. Epub 2016 Jun 8.

PMID:
27197529
19.

Ultra-sensitive sequencing reveals an age-related increase in somatic mitochondrial mutations that are inconsistent with oxidative damage.

Kennedy SR, Salk JJ, Schmitt MW, Loeb LA.

PLoS Genet. 2013;9(9):e1003794. doi: 10.1371/journal.pgen.1003794. Epub 2013 Sep 26.

20.

Genome analysis of the domestic dog (Korean Jindo) by massively parallel sequencing.

Kim RN, Kim DS, Choi SH, Yoon BH, Kang A, Nam SH, Kim DW, Kim JJ, Ha JH, Toyoda A, Fujiyama A, Kim A, Kim MY, Park KH, Lee KS, Park HS.

DNA Res. 2012 Jun;19(3):275-87. doi: 10.1093/dnares/dss011. Epub 2012 Apr 3.

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