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Items: 1 to 20 of 84

1.

Somatic mutation in single human neurons tracks developmental and transcriptional history.

Lodato MA, Woodworth MB, Lee S, Evrony GD, Mehta BK, Karger A, Lee S, Chittenden TW, D'Gama AM, Cai X, Luquette LJ, Lee E, Park PJ, Walsh CA.

Science. 2015 Oct 2;350(6256):94-98. doi: 10.1126/science.aab1785.

2.

Cell lineage analysis in human brain using endogenous retroelements.

Evrony GD, Lee E, Mehta BK, Benjamini Y, Johnson RM, Cai X, Yang L, Haseley P, Lehmann HS, Park PJ, Walsh CA.

Neuron. 2015 Jan 7;85(1):49-59. doi: 10.1016/j.neuron.2014.12.028.

3.

NEUROSCIENCE. A tree of the human brain.

Linnarsson S.

Science. 2015 Oct 2;350(6256):37. doi: 10.1126/science.aad2792. No abstract available.

PMID:
26430106
4.

Mutational History of a Human Cell Lineage from Somatic to Induced Pluripotent Stem Cells.

Rouhani FJ, Nik-Zainal S, Wuster A, Li Y, Conte N, Koike-Yusa H, Kumasaka N, Vallier L, Yusa K, Bradley A.

PLoS Genet. 2016 Apr 7;12(4):e1005932. doi: 10.1371/journal.pgen.1005932. eCollection 2016 Apr.

5.

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.

Evrony GD, Cai X, Lee E, Hills LB, Elhosary PC, Lehmann HS, Parker JJ, Atabay KD, Gilmore EC, Poduri A, Park PJ, Walsh CA.

Cell. 2012 Oct 26;151(3):483-96. doi: 10.1016/j.cell.2012.09.035.

6.

Different mutational rates and mechanisms in human cells at pregastrulation and neurogenesis.

Bae T, Tomasini L, Mariani J, Zhou B, Roychowdhury T, Franjic D, Pletikos M, Pattni R, Chen BJ, Venturini E, Riley-Gillis B, Sestan N, Urban AE, Abyzov A, Vaccarino FM.

Science. 2018 Feb 2;359(6375):550-555. doi: 10.1126/science.aan8690. Epub 2017 Dec 7.

7.

Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network.

McConnell MJ, Moran JV, Abyzov A, Akbarian S, Bae T, Cortes-Ciriano I, Erwin JA, Fasching L, Flasch DA, Freed D, Ganz J, Jaffe AE, Kwan KY, Kwon M, Lodato MA, Mills RE, Paquola ACM, Rodin RE, Rosenbluh C, Sestan N, Sherman MA, Shin JH, Song S, Straub RE, Thorpe J, Weinberger DR, Urban AE, Zhou B, Gage FH, Lehner T, Senthil G, Walsh CA, Chess A, Courchesne E, Gleeson JG, Kidd JM, Park PJ, Pevsner J, Vaccarino FM; Brain Somatic Mosaicism Network.

Science. 2017 Apr 28;356(6336). pii: eaal1641. doi: 10.1126/science.aal1641. Epub 2017 Apr 27. Review.

8.

Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain.

Pilaz LJ, McMahon JJ, Miller EE, Lennox AL, Suzuki A, Salmon E, Silver DL.

Neuron. 2016 Jan 6;89(1):83-99. doi: 10.1016/j.neuron.2015.12.007.

9.

Resolving rates of mutation in the brain using single-neuron genomics.

Evrony GD, Lee E, Park PJ, Walsh CA.

Elife. 2016 Feb 22;5. pii: e12966. doi: 10.7554/eLife.12966.

10.

Why Cortical Neurons Cannot Divide, and Why Do They Usually Die in the Attempt?

Aranda-Anzaldo A, Dent MA.

J Neurosci Res. 2017 Apr;95(4):921-929. doi: 10.1002/jnr.23765. Epub 2016 Jul 12. Review.

PMID:
27402311
11.

Somatic mutation, genomic variation, and neurological disease.

Poduri A, Evrony GD, Cai X, Walsh CA.

Science. 2013 Jul 5;341(6141):1237758. doi: 10.1126/science.1237758. Review.

12.

Tumour procurement, DNA extraction, coverage analysis and optimisation of mutation-detection algorithms for human melanoma genomes.

Wilmott JS, Field MA, Johansson PA, Kakavand H, Shang P, De Paoli-Iseppi R, Vilain RE, Pupo GM, Tembe V, Jakrot V, Shang CA, Cebon J, Shackleton M, Fitzgerald A, Thompson JF, Hayward NK, Mann GJ, Scolyer RA.

Pathology. 2015 Dec;47(7):683-93. doi: 10.1097/PAT.0000000000000324. Erratum in: Pathology. 2016 Jan;48(1):104.

PMID:
26517638
13.

Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns.

Enge M, Arda HE, Mignardi M, Beausang J, Bottino R, Kim SK, Quake SR.

Cell. 2017 Oct 5;171(2):321-330.e14. doi: 10.1016/j.cell.2017.09.004. Epub 2017 Sep 28.

14.

DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes.

Woo YH, Li WH.

Nat Commun. 2012;3:1004. doi: 10.1038/ncomms1982.

PMID:
22893128
15.

The cell lineage of neuronal subtypes in the mammalian cerebral cortex.

Parnavelas JG, Mione MC, Lavdas A.

Ciba Found Symp. 1995;193:41-58; discussion 59-70. Review.

PMID:
8727486
16.

[Detection of somatic mutations in deteriorated cell of peritoneal mesothelioma by whole genome sequencing].

Chen B, Ma J, Chen L, Hong X, Tang X, Chen S.

Zhejiang Da Xue Xue Bao Yi Xue Ban. 2013 Jul;42(4):426-30. Chinese.

PMID:
24022931
17.

Whole-Genome Sequencing of Growth Hormone (GH)-Secreting Pituitary Adenomas.

Välimäki N, Demir H, Pitkänen E, Kaasinen E, Karppinen A, Kivipelto L, Schalin-Jäntti C, Aaltonen LA, Karhu A.

J Clin Endocrinol Metab. 2015 Oct;100(10):3918-27. doi: 10.1210/jc.2015-3129. Epub 2015 Aug 17.

PMID:
26280510
18.
19.

Inference of tumor phylogenies with improved somatic mutation discovery.

Salari R, Saleh SS, Kashef-Haghighi D, Khavari D, Newburger DE, West RB, Sidow A, Batzoglou S.

J Comput Biol. 2013 Nov;20(11):933-44. doi: 10.1089/cmb.2013.0106.

20.

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.

Haradhvala NJ, Polak P, Stojanov P, Covington KR, Shinbrot E, Hess JM, Rheinbay E, Kim J, Maruvka YE, Braunstein LZ, Kamburov A, Hanawalt PC, Wheeler DA, Koren A, Lawrence MS, Getz G.

Cell. 2016 Jan 28;164(3):538-49. doi: 10.1016/j.cell.2015.12.050. Epub 2016 Jan 21.

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