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Items: 1 to 20 of 499

1.

Comprehensively evaluating cis-regulatory variation in the human prostate transcriptome by using gene-level allele-specific expression.

Larson NB, McDonnell S, French AJ, Fogarty Z, Cheville J, Middha S, Riska S, Baheti S, Nair AA, Wang L, Schaid DJ, Thibodeau SN.

Am J Hum Genet. 2015 Jun 4;96(6):869-82. doi: 10.1016/j.ajhg.2015.04.015. Epub 2015 May 14.

2.

Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues.

Zhang M, Lykke-Andersen S, Zhu B, Xiao W, Hoskins JW, Zhang X, Rost LM, Collins I, Bunt MV, Jia J, Parikh H, Zhang T, Song L, Jermusyk A, Chung CC, Zhu B, Zhou W, Matters GL, Kurtz RC, Yeager M, Jensen TH, Brown KM, Ongen H, Bamlet WR, Murray BA, McCarthy MI, Chanock SJ, Chatterjee N, Wolpin BM, Smith JP, Olson SH, Petersen GM, Shi J, Amundadottir L.

Gut. 2018 Mar;67(3):521-533. doi: 10.1136/gutjnl-2016-313146. Epub 2017 Jun 20.

3.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

4.

Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.

Brown CD, Mangravite LM, Engelhardt BE.

PLoS Genet. 2013;9(8):e1003649. doi: 10.1371/journal.pgen.1003649. Epub 2013 Aug 1.

5.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

6.

Comparing allele specific expression and local expression quantitative trait loci and the influence of gene expression on complex trait variation in cattle.

Khansefid M, Pryce JE, Bolormaa S, Chen Y, Millen CA, Chamberlain AJ, Vander Jagt CJ, Goddard ME.

BMC Genomics. 2018 Nov 3;19(1):793. doi: 10.1186/s12864-018-5181-0.

7.

Putative cis-regulatory drivers in colorectal cancer.

Ongen H, Andersen CL, Bramsen JB, Oster B, Rasmussen MH, Ferreira PG, Sandoval J, Vidal E, Whiffin N, Planchon A, Padioleau I, Bielser D, Romano L, Tomlinson I, Houlston RS, Esteller M, Orntoft TF, Dermitzakis ET.

Nature. 2014 Aug 7;512(7512):87-90. doi: 10.1038/nature13602. Epub 2014 Jul 23.

PMID:
25079323
8.

The genetic regulation of transcription in human endometrial tissue.

Fung JN, Girling JE, Lukowski SW, Sapkota Y, Wallace L, Holdsworth-Carson SJ, Henders AK, Healey M, Rogers PAW, Powell JE, Montgomery GW.

Hum Reprod. 2017 Apr 1;32(4):893-904. doi: 10.1093/humrep/dex006.

PMID:
28177073
9.

Variants at IRX4 as prostate cancer expression quantitative trait loci.

Xu X, Hussain WM, Vijai J, Offit K, Rubin MA, Demichelis F, Klein RJ.

Eur J Hum Genet. 2014 Apr;22(4):558-63. doi: 10.1038/ejhg.2013.195. Epub 2013 Sep 11.

10.

Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis.

Maroilley T, Lemonnier G, Lecardonnel J, Esquerré D, Ramayo-Caldas Y, Mercat MJ, Rogel-Gaillard C, Estellé J.

BMC Genomics. 2017 Dec 13;18(1):967. doi: 10.1186/s12864-017-4354-6.

11.

Large-scale East-Asian eQTL mapping reveals novel candidate genes for LD mapping and the genomic landscape of transcriptional effects of sequence variants.

Narahara M, Higasa K, Nakamura S, Tabara Y, Kawaguchi T, Ishii M, Matsubara K, Matsuda F, Yamada R.

PLoS One. 2014 Jun 23;9(6):e100924. doi: 10.1371/journal.pone.0100924. eCollection 2014.

12.

Dissecting cis regulation of gene expression in human metabolic tissues.

Dobrin R, Greenawalt DM, Hu G, Kemp DM, Kaplan LM, Schadt EE, Emilsson V.

PLoS One. 2011;6(8):e23480. doi: 10.1371/journal.pone.0023480. Epub 2011 Aug 31.

13.

Principles of microRNA Regulation Revealed Through Modeling microRNA Expression Quantitative Trait Loci.

Budach S, Heinig M, Marsico A.

Genetics. 2016 Aug;203(4):1629-40. doi: 10.1534/genetics.116.187153. Epub 2016 Jun 3.

14.

Patterns of cis regulatory variation in diverse human populations.

Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, Durbin R, Deloukas P, Dermitzakis ET.

PLoS Genet. 2012;8(4):e1002639. doi: 10.1371/journal.pgen.1002639. Epub 2012 Apr 19.

15.

Genetic architecture of microRNA expression: implications for the transcriptome and complex traits.

Gamazon ER, Ziliak D, Im HK, LaCroix B, Park DS, Cox NJ, Huang RS.

Am J Hum Genet. 2012 Jun 8;90(6):1046-63. doi: 10.1016/j.ajhg.2012.04.023. Epub 2012 May 31.

16.

An integrative systems genetics approach reveals potential causal genes and pathways related to obesity.

Kogelman LJ, Zhernakova DV, Westra HJ, Cirera S, Fredholm M, Franke L, Kadarmideen HN.

Genome Med. 2015 Oct 20;7:105. doi: 10.1186/s13073-015-0229-0.

17.

Conditional eQTL analysis reveals allelic heterogeneity of gene expression.

Jansen R, Hottenga JJ, Nivard MG, Abdellaoui A, Laport B, de Geus EJ, Wright FA, Penninx BWJH, Boomsma DI.

Hum Mol Genet. 2017 Apr 15;26(8):1444-1451. doi: 10.1093/hmg/ddx043.

18.

Synthesis of 53 tissue and cell line expression QTL datasets reveals master eQTLs.

Zhang X, Gierman HJ, Levy D, Plump A, Dobrin R, Goring HH, Curran JE, Johnson MP, Blangero J, Kim SK, O'Donnell CJ, Emilsson V, Johnson AD.

BMC Genomics. 2014 Jun 27;15:532. doi: 10.1186/1471-2164-15-532.

19.

Integrative Multi-omic Analysis of Human Platelet eQTLs Reveals Alternative Start Site in Mitofusin 2.

Simon LM, Chen ES, Edelstein LC, Kong X, Bhatlekar S, Rigoutsos I, Bray PF, Shaw CA.

Am J Hum Genet. 2016 May 5;98(5):883-897. doi: 10.1016/j.ajhg.2016.03.007. Epub 2016 Apr 28.

20.

Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs).

Handelman SK, Seweryn M, Smith RM, Hartmann K, Wang D, Pietrzak M, Johnson AD, Kloczkowski A, Sadee W.

BMC Genomics. 2015;16 Suppl 8:S8. doi: 10.1186/1471-2164-16-S8-S8. Epub 2015 Jun 18.

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