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Items: 1 to 20 of 131

1.

Genetic perturbation of the maize methylome.

Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, Vaughn MW, Kaeppler SM, Jeddeloh JA, Springer NM.

Plant Cell. 2014 Dec;26(12):4602-16. doi: 10.1105/tpc.114.133140. Epub 2014 Dec 19.

2.

Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways.

Anderson SN, Zynda GJ, Song J, Han Z, Vaughn MW, Li Q, Springer NM.

G3 (Bethesda). 2018 May 31;8(6):1921-1932. doi: 10.1534/g3.118.200284.

3.

Natural variation for alleles under epigenetic control by the maize chromomethylase zmet2.

Makarevitch I, Stupar RM, Iniguez AL, Haun WJ, Barbazuk WB, Kaeppler SM, Springer NM.

Genetics. 2007 Oct;177(2):749-60. Epub 2007 Jul 29.

4.

Maize chromomethylase Zea methyltransferase2 is required for CpNpG methylation.

Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM.

Plant Cell. 2001 Aug;13(8):1919-28.

5.

Genomic distribution of H3K9me2 and DNA methylation in a maize genome.

West PT, Li Q, Ji L, Eichten SR, Song J, Vaughn MW, Schmitz RJ, Springer NM.

PLoS One. 2014 Aug 14;9(8):e105267. doi: 10.1371/journal.pone.0105267. eCollection 2014.

6.

Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription.

Forestan C, Farinati S, Aiese Cigliano R, Lunardon A, Sanseverino W, Varotto S.

BMC Plant Biol. 2017 Oct 12;17(1):161. doi: 10.1186/s12870-017-1108-1.

7.

DNA METHYLTRANSFERASE 1 is involved in (m)CG and (m)CCG DNA methylation and is essential for sporophyte development in Physcomitrella patens.

Yaari R, Noy-Malka C, Wiedemann G, Auerbach Gershovitz N, Reski R, Katz A, Ohad N.

Plant Mol Biol. 2015 Jul;88(4-5):387-400. doi: 10.1007/s11103-015-0328-8. Epub 2015 May 6.

PMID:
25944663
8.

Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture.

Han Z, Crisp PA, Stelpflug S, Kaeppler SM, Li Q, Springer NM.

Genetics. 2018 Aug;209(4):983-995. doi: 10.1534/genetics.118.300987. Epub 2018 May 30.

PMID:
29848487
9.

Genome-Wide Epigenetic Regulation of Gene Transcription in Maize Seeds.

Lu X, Wang W, Ren W, Chai Z, Guo W, Chen R, Wang L, Zhao J, Lang Z, Fan Y, Zhao J, Zhang C.

PLoS One. 2015 Oct 15;10(10):e0139582. doi: 10.1371/journal.pone.0139582. eCollection 2015.

10.

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize.

Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK.

Genome Res. 2013 Apr;23(4):628-37. doi: 10.1101/gr.146985.112. Epub 2012 Dec 26.

11.

RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.

Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM.

Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14728-33. doi: 10.1073/pnas.1514680112. Epub 2015 Nov 9.

12.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski M, Lu Z, Kendall J, Donoghue MT, Reinders J, Llaca V, Deschamps S, Smith A, Levy D, McCombie WR, Tingey S, Rafalski A, Hicks J, Ware D, Martienssen RA.

Genome Res. 2013 Oct;23(10):1651-62. doi: 10.1101/gr.153510.112. Epub 2013 Jun 5.

13.

Transmission of epi-alleles with MET1-dependent dense methylation in Arabidopsis thaliana.

Watson M, Hawkes E, Meyer P.

PLoS One. 2014 Aug 19;9(8):e105338. doi: 10.1371/journal.pone.0105338. eCollection 2014.

14.

Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm.

Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM.

Plant Cell. 2011 Dec;23(12):4221-33. doi: 10.1105/tpc.111.092668. Epub 2011 Dec 23.

15.

A single CMT methyltransferase homolog is involved in CHG DNA methylation and development of Physcomitrella patens.

Noy-Malka C, Yaari R, Itzhaki R, Mosquna A, Auerbach Gershovitz N, Katz A, Ohad N.

Plant Mol Biol. 2014 Apr;84(6):719-35. doi: 10.1007/s11103-013-0165-6. Epub 2013 Dec 27.

PMID:
24370935
16.

Maize Unstable factor for orange1 is required for maintaining silencing associated with paramutation at the pericarp color1 and booster1 loci.

Sekhon RS, Wang PH, Sidorenko L, Chandler VL, Chopra S.

PLoS Genet. 2012;8(10):e1002980. doi: 10.1371/journal.pgen.1002980. Epub 2012 Oct 4.

17.
18.

Inactivation of a DNA methylation pathway in maize reproductive organs results in apomixis-like phenotypes.

Garcia-Aguilar M, Michaud C, Leblanc O, Grimanelli D.

Plant Cell. 2010 Oct;22(10):3249-67. doi: 10.1105/tpc.109.072181. Epub 2010 Oct 29.

19.

Paramutation in maize and related allelic interactions.

Patterson GI, Chandler VL.

Curr Top Microbiol Immunol. 1995;197:121-41. Review. No abstract available.

PMID:
7493488
20.

Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants.

Du J, Zhong X, Bernatavichute YV, Stroud H, Feng S, Caro E, Vashisht AA, Terragni J, Chin HG, Tu A, Hetzel J, Wohlschlegel JA, Pradhan S, Patel DJ, Jacobsen SE.

Cell. 2012 Sep 28;151(1):167-80. doi: 10.1016/j.cell.2012.07.034.

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