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Items: 1 to 20 of 249

1.

Transcriptome-wide mapping of pseudouridines: pseudouridine synthases modify specific mRNAs in S. cerevisiae.

Lovejoy AF, Riordan DP, Brown PO.

PLoS One. 2014 Oct 29;9(10):e110799. doi: 10.1371/journal.pone.0110799. eCollection 2014.

2.

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells.

Carlile TM, Rojas-Duran MF, Zinshteyn B, Shin H, Bartoli KM, Gilbert WV.

Nature. 2014 Nov 6;515(7525):143-6. doi: 10.1038/nature13802. Epub 2014 Sep 5.

3.

Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Schwartz S, Bernstein DA, Mumbach MR, Jovanovic M, Herbst RH, León-Ricardo BX, Engreitz JM, Guttman M, Satija R, Lander ES, Fink G, Regev A.

Cell. 2014 Sep 25;159(1):148-162. doi: 10.1016/j.cell.2014.08.028. Epub 2014 Sep 11.

4.

Pseudo-Seq: Genome-Wide Detection of Pseudouridine Modifications in RNA.

Carlile TM, Rojas-Duran MF, Gilbert WV.

Methods Enzymol. 2015;560:219-45. doi: 10.1016/bs.mie.2015.03.011. Epub 2015 May 28.

PMID:
26253973
5.

Transcriptome-Wide Identification of Pseudouridine Modifications Using Pseudo-seq.

Carlile TM, Rojas-Duran MF, Gilbert WV.

Curr Protoc Mol Biol. 2015 Oct 1;112:4.25.1-24. doi: 10.1002/0471142727.mb0425s112.

PMID:
26423590
6.
7.

PPUS: a web server to predict PUS-specific pseudouridine sites.

Li YH, Zhang G, Cui Q.

Bioinformatics. 2015 Oct 15;31(20):3362-4. doi: 10.1093/bioinformatics/btv366. Epub 2015 Jun 14.

PMID:
26076723
8.

Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome.

Li X, Zhu P, Ma S, Song J, Bai J, Sun F, Yi C.

Nat Chem Biol. 2015 Aug;11(8):592-7. doi: 10.1038/nchembio.1836. Epub 2015 Jun 15.

PMID:
26075521
9.

Pseudouridine Chemical Labeling and Profiling.

Li X, Ma S, Yi C.

Methods Enzymol. 2015;560:247-72. doi: 10.1016/bs.mie.2015.03.010. Epub 2015 Jun 2.

PMID:
26253974
10.

The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae.

Torchet C, Badis G, Devaux F, Costanzo G, Werner M, Jacquier A.

RNA. 2005 Jun;11(6):928-38.

11.

Pseudouridylation meets next-generation sequencing.

Zaringhalam M, Papavasiliou FN.

Methods. 2016 Sep 1;107:63-72. doi: 10.1016/j.ymeth.2016.03.001. Epub 2016 Mar 8. Review.

PMID:
26968262
13.
14.

Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome.

Schattner P, Decatur WA, Davis CA, Ares M Jr, Fournier MJ, Lowe TM.

Nucleic Acids Res. 2004 Aug 11;32(14):4281-96. Print 2004.

15.

Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs.

Decatur WA, Schnare MN.

Mol Cell Biol. 2008 May;28(10):3089-100. doi: 10.1128/MCB.01574-07. Epub 2008 Mar 10.

16.

U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP.

Wu G, Xiao M, Yang C, Yu YT.

EMBO J. 2011 Jan 5;30(1):79-89. doi: 10.1038/emboj.2010.316. Epub 2010 Dec 3.

17.

Eukaryotic stand-alone pseudouridine synthases - RNA modifying enzymes and emerging regulators of gene expression?

Rintala-Dempsey AC, Kothe U.

RNA Biol. 2017 Sep 2;14(9):1185-1196. doi: 10.1080/15476286.2016.1276150. Epub 2017 Jan 3. Review.

18.

Dual nature of pseudouridylation in U2 snRNA: Pus1p-dependent and Pus1p-independent activities in yeasts and higher eukaryotes.

Deryusheva S, Gall JG.

RNA. 2017 Jul;23(7):1060-1067. doi: 10.1261/rna.061226.117. Epub 2017 Apr 21.

19.

Pseudouridine: still mysterious, but never a fake (uridine)!

Spenkuch F, Motorin Y, Helm M.

RNA Biol. 2014;11(12):1540-54. doi: 10.4161/15476286.2014.992278. Review.

20.

Pseudouridine in mRNA: Incorporation, Detection, and Recoding.

Wu G, Huang C, Yu YT.

Methods Enzymol. 2015;560:187-217. doi: 10.1016/bs.mie.2015.03.009. Epub 2015 Apr 27.

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