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Items: 1 to 20 of 66

1.

Population genomics of secondary contact.

Geneva A, Garrigan D.

Genes (Basel). 2010 Jun 25;1(1):124-42. doi: 10.3390/genes1010124.

2.

Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans.

Steinrücken M, Spence JP, Kamm JA, Wieczorek E, Song YS.

Mol Ecol. 2018 Oct;27(19):3873-3888. doi: 10.1111/mec.14565. Epub 2018 Apr 17.

PMID:
29603507
3.

Reticulate evolution within a spruce (Picea) species complex revealed by population genomic analysis.

Sun Y, Abbott RJ, Lu Z, Mao K, Zhang L, Wang X, Ru D, Liu J.

Evolution. 2018 Dec;72(12):2669-2681. doi: 10.1111/evo.13624. Epub 2018 Oct 26.

PMID:
30315582
4.

Model-based analyses of whole-genome data reveal a complex evolutionary history involving archaic introgression in Central African Pygmies.

Hsieh P, Woerner AE, Wall JD, Lachance J, Tishkoff SA, Gutenkunst RN, Hammer MF.

Genome Res. 2016 Mar;26(3):291-300. doi: 10.1101/gr.196634.115. Epub 2016 Feb 17. Erratum in: Genome Res. 2016 May;26(5):717.1.

5.

Evidence for archaic adaptive introgression in humans.

Racimo F, Sankararaman S, Nielsen R, Huerta-Sánchez E.

Nat Rev Genet. 2015 Jun;16(6):359-71. doi: 10.1038/nrg3936. Epub 2015 May 12. Review.

6.

A genetic legacy from archaic Homo.

Hawks J, Cochran G, Harpending HC, Lahn BT.

Trends Genet. 2008 Jan;24(1):19-23. Epub 2007 Dec 3.

PMID:
18063439
7.

An HMM-based comparative genomic framework for detecting introgression in eukaryotes.

Liu KJ, Dai J, Truong K, Song Y, Kohn MH, Nakhleh L.

PLoS Comput Biol. 2014 Jun 12;10(6):e1003649. doi: 10.1371/journal.pcbi.1003649. eCollection 2014 Jun.

8.

Can we continue to neglect genomic variation in introgression rates when inferring the history of speciation? A case study in a Mytilus hybrid zone.

Roux C, Fraïsse C, Castric V, Vekemans X, Pogson GH, Bierne N.

J Evol Biol. 2014 Aug;27(8):1662-75. doi: 10.1111/jeb.12425. Epub 2014 Jun 10.

9.

Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans.

Jagoda E, Lawson DJ, Wall JD, Lambert D, Muller C, Westaway M, Leavesley M, Capellini TD, Mirazón Lahr M, Gerbault P, Thomas MG, Migliano AB, Willerslev E, Metspalu M, Pagani L.

Mol Biol Evol. 2017 Dec 6. doi: 10.1093/molbev/msx314. [Epub ahead of print]

10.

Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage.

Evans PD, Mekel-Bobrov N, Vallender EJ, Hudson RR, Lahn BT.

Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18178-83. Epub 2006 Nov 7.

11.

The evolution and functional impact of human deletion variants shared with archaic hominin genomes.

Lin YL, Pavlidis P, Karakoc E, Ajay J, Gokcumen O.

Mol Biol Evol. 2015 Apr;32(4):1008-19. doi: 10.1093/molbev/msu405. Epub 2015 Jan 2.

12.

Something old, something borrowed: admixture and adaptation in human evolution.

Dannemann M, Racimo F.

Curr Opin Genet Dev. 2018 Dec;53:1-8. doi: 10.1016/j.gde.2018.05.009. Epub 2018 Jun 9. Review.

PMID:
29894925
13.

Maintenance of fungal pathogen species that are specialized to different hosts: allopatric divergence and introgression through secondary contact.

Gladieux P, Vercken E, Fontaine MC, Hood ME, Jonot O, Couloux A, Giraud T.

Mol Biol Evol. 2011 Jan;28(1):459-71. doi: 10.1093/molbev/msq235. Epub 2010 Sep 13.

PMID:
20837605
14.
15.

Neanderthal and Denisova genetic affinities with contemporary humans: introgression versus common ancestral polymorphisms.

Lowery RK, Uribe G, Jimenez EB, Weiss MA, Herrera KJ, Regueiro M, Herrera RJ.

Gene. 2013 Nov 1;530(1):83-94. doi: 10.1016/j.gene.2013.06.005. Epub 2013 Jul 19.

PMID:
23872234
16.

Archaic human genomics.

Disotell TR.

Am J Phys Anthropol. 2012;149 Suppl 55:24-39. doi: 10.1002/ajpa.22159. Epub 2012 Nov 2. Review.

PMID:
23124308
17.

Genome-wide single nucleotide polymorphism analysis reveals recent genetic introgression from domestic pigs into Northwest European wild boar populations.

Goedbloed DJ, Megens HJ, Van Hooft P, Herrero-Medrano JM, Lutz W, Alexandri P, Crooijmans RP, Groenen M, Van Wieren SE, Ydenberg RC, Prins HH.

Mol Ecol. 2013 Feb;22(3):856-66. doi: 10.1111/j.1365-294X.2012.05670.x. Epub 2012 Jun 26.

PMID:
22731769
18.

Insights into hominin phenotypic and dietary evolution from ancient DNA sequence data.

Perry GH, Kistler L, Kelaita MA, Sams AJ.

J Hum Evol. 2015 Feb;79:55-63. doi: 10.1016/j.jhevol.2014.10.018. Epub 2015 Jan 3.

PMID:
25563409
19.

Hybridization, mitochondrial DNA phylogeography, and prediction of the early stages of reproductive isolation: lessons from New Zealand cicadas (genus Kikihia).

Marshall DC, Hill KB, Cooley JR, Simon C.

Syst Biol. 2011 Jul;60(4):482-502. doi: 10.1093/sysbio/syr017. Epub 2011 Apr 6.

PMID:
21471306
20.

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