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Items: 1 to 20 of 241

1.

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries.

Carpenter ML, Buenrostro JD, Valdiosera C, Schroeder H, Allentoft ME, Sikora M, Rasmussen M, Gravel S, Guillén S, Nekhrizov G, Leshtakov K, Dimitrova D, Theodossiev N, Pettener D, Luiselli D, Sandoval K, Moreno-Estrada A, Li Y, Wang J, Gilbert MT, Willerslev E, Greenleaf WJ, Bustamante CD.

Am J Hum Genet. 2013 Nov 7;93(5):852-64. doi: 10.1016/j.ajhg.2013.10.002. Epub 2013 Oct 25.

2.

In-solution Y-chromosome capture-enrichment on ancient DNA libraries.

Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC.

BMC Genomics. 2018 Aug 14;19(1):608. doi: 10.1186/s12864-018-4945-x.

3.

Target enrichment via DNA hybridization capture.

Horn S.

Methods Mol Biol. 2012;840:177-88. doi: 10.1007/978-1-61779-516-9_21.

PMID:
22237535
4.

Ancient whole genome enrichment using baits built from modern DNA.

Enk JM, Devault AM, Kuch M, Murgha YE, Rouillard JM, Poinar HN.

Mol Biol Evol. 2014 May;31(5):1292-4. doi: 10.1093/molbev/msu074. Epub 2014 Feb 13.

PMID:
24531081
5.

Analysis of Whole Mitogenomes from Ancient Samples.

Fortes GG, Paijmans JL.

Methods Mol Biol. 2015;1347:179-95. doi: 10.1007/978-1-4939-2990-0_13.

PMID:
26374318
6.

Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel.

Mohandesan E, Speller CF, Peters J, Uerpmann HP, Uerpmann M, De Cupere B, Hofreiter M, Burger PA.

Mol Ecol Resour. 2017 Mar;17(2):300-313. doi: 10.1111/1755-0998.12551. Epub 2016 Aug 1.

7.

Case study: enrichment of ancient mitochondrial DNA by hybridization capture.

Horn S.

Methods Mol Biol. 2012;840:189-95. doi: 10.1007/978-1-61779-516-9_22.

PMID:
22237536
8.

Improving ancient DNA read mapping against modern reference genomes.

Schubert M, Ginolhac A, Lindgreen S, Thompson JF, Al-Rasheid KA, Willerslev E, Krogh A, Orlando L.

BMC Genomics. 2012 May 10;13:178. doi: 10.1186/1471-2164-13-178.

9.

Performance of microarray and liquid based capture methods for target enrichment for massively parallel sequencing and SNP discovery.

Kiialainen A, Karlberg O, Ahlford A, Sigurdsson S, Lindblad-Toh K, Syvänen AC.

PLoS One. 2011 Feb 9;6(2):e16486. doi: 10.1371/journal.pone.0016486.

10.

The efficacy of whole human genome capture on ancient dental calculus and dentin.

Ziesemer KA, Ramos-Madrigal J, Mann AE, Brandt BW, Sankaranarayanan K, Ozga AT, Hoogland M, Hofman CA, Salazar-García DC, Frohlich B, Milner GR, Stone AC, Aldenderfer M, Lewis CM Jr, Hofman CL, Warinner C, Schroeder H.

Am J Phys Anthropol. 2019 Mar;168(3):496-509. doi: 10.1002/ajpa.23763. Epub 2018 Dec 26.

PMID:
30586168
11.

Analysis of high-throughput ancient DNA sequencing data.

Kircher M.

Methods Mol Biol. 2012;840:197-228. doi: 10.1007/978-1-61779-516-9_23.

PMID:
22237537
12.

Targeted capture and sequencing of gene-sized DNA molecules.

Giolai M, Paajanen P, Verweij W, Percival-Alwyn L, Baker D, Witek K, Jupe F, Bryan G, Hein I, Jones JD, Clark MD.

Biotechniques. 2016 Dec 1;61(6):315-322.

13.

Optimal Ancient DNA Yields from the Inner Ear Part of the Human Petrous Bone.

Pinhasi R, Fernandes D, Sirak K, Novak M, Connell S, Alpaslan-Roodenberg S, Gerritsen F, Moiseyev V, Gromov A, Raczky P, Anders A, Pietrusewsky M, Rollefson G, Jovanovic M, Trinhhoang H, Bar-Oz G, Oxenham M, Matsumura H, Hofreiter M.

PLoS One. 2015 Jun 18;10(6):e0129102. doi: 10.1371/journal.pone.0129102. eCollection 2015.

14.

[Establishment of target genomic DNA capturing system for next generation sequencing].

Chen D, Zhang W, Zhu ZD, Huang Y, Wang P, Zhou BB, Yang XN, Xiao HS, Zhang QH.

Yi Chuan. 2010 Dec;32(12):1296-303. Chinese.

PMID:
21513157
15.

Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics.

Hancock-Hanser BL, Frey A, Leslie MS, Dutton PH, Archer FI, Morin PA.

Mol Ecol Resour. 2013 Mar;13(2):254-68. doi: 10.1111/1755-0998.12059. Epub 2013 Jan 25.

PMID:
23351075
16.

The next generation of target capture technologies - large DNA fragment enrichment and sequencing determines regional genomic variation of high complexity.

Dapprich J, Ferriola D, Mackiewicz K, Clark PM, Rappaport E, D'Arcy M, Sasson A, Gai X, Schug J, Kaestner KH, Monos D.

BMC Genomics. 2016 Jul 9;17:486. doi: 10.1186/s12864-016-2836-6.

17.

Whole-Genome Capture of Ancient DNA Using Homemade Baits.

González Fortes G, Paijmans JLA.

Methods Mol Biol. 2019;1963:93-105. doi: 10.1007/978-1-4939-9176-1_11.

PMID:
30875048
18.

A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits.

Karamitros T, Magiorkinis G.

Nucleic Acids Res. 2015 Dec 15;43(22):e152. doi: 10.1093/nar/gkv773. Epub 2015 Aug 3.

19.

Sequencing and analysis of Neanderthal genomic DNA.

Noonan JP, Coop G, Kudaravalli S, Smith D, Krause J, Alessi J, Chen F, Platt D, Pääbo S, Pritchard JK, Rubin EM.

Science. 2006 Nov 17;314(5802):1113-8.

20.

Ancient human genomics: the methodology behind reconstructing evolutionary pathways.

Marciniak S, Klunk J, Devault A, Enk J, Poinar HN.

J Hum Evol. 2015 Feb;79:21-34. doi: 10.1016/j.jhevol.2014.11.003. Epub 2015 Jan 15.

PMID:
25601038

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