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Items: 1 to 20 of 59

1.

What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

Barona-Gómez F, Cruz-Morales P, Noda-García L.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):35-43. doi: 10.1007/s10482-011-9655-1. Epub 2011 Oct 21.

PMID:
22016333
2.

Toward the automated generation of genome-scale metabolic networks in the SEED.

DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

BMC Bioinformatics. 2007 Apr 26;8:139.

3.

Comparative metabolic capabilities for Micrococcus luteus NCTC 2665, the "Fleming" strain, and actinobacteria.

Rokem JS, Vongsangnak W, Nielsen J.

Biotechnol Bioeng. 2011 Nov;108(11):2770-5. doi: 10.1002/bit.23212. Epub 2011 Jun 9.

PMID:
21618466
4.

Biodiscovery from rare actinomycetes: an eco-taxonomical perspective.

Kurtböke DI.

Appl Microbiol Biotechnol. 2012 Mar;93(5):1843-52. doi: 10.1007/s00253-012-3898-2. Review.

PMID:
22297430
5.

Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism.

Alam MT, Medema MH, Takano E, Breitling R.

FEBS Lett. 2011 Jul 21;585(14):2389-94. doi: 10.1016/j.febslet.2011.06.014. Epub 2011 Jun 22.

6.

Prokaryotic systematics in the genomics era.

Zhi XY, Zhao W, Li WJ, Zhao GP.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):21-34. doi: 10.1007/s10482-011-9667-x. Epub 2011 Nov 25. Review.

PMID:
22116211
7.

Microbial systematics in the post-genomics era.

Gao B, Gupta RS.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):45-54. doi: 10.1007/s10482-011-9663-1. Epub 2011 Nov 3. Review.

PMID:
22048742
8.

Systematics of prokaryotes: the state of the art.

Kämpfer P.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):3-11. doi: 10.1007/s10482-011-9660-4. Epub 2011 Nov 1. Review.

PMID:
22041978
9.

Microbial systematics and taxonomy: relevance for a microbial commons.

Moore ER, Mihaylova SA, Vandamme P, Krichevsky MI, Dijkshoorn L.

Res Microbiol. 2010 Jul-Aug;161(6):430-8. doi: 10.1016/j.resmic.2010.05.007. Epub 2010 Jun 1. Review.

PMID:
20670913
10.

A call to arms for systematists: revitalising the purpose and practises underpinning the description of novel microbial taxa.

Sutcliffe IC, Trujillo ME, Goodfellow M.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):13-20. doi: 10.1007/s10482-011-9664-0. Epub 2011 Oct 30. Review. Erratum in: Antonie Van Leeuwenhoek. 2012 Nov;102(4):755.

PMID:
22038177
11.

Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks.

Kim TY, Kim HU, Lee SY.

Metab Eng. 2010 Mar;12(2):105-11. doi: 10.1016/j.ymben.2009.05.004. Epub 2009 May 28.

PMID:
19481614
12.

New strategies on molecular biology applied to microbial systematics.

Höfling JF, Rosa EA, Baptista MJ, Spolidório DM.

Rev Inst Med Trop Sao Paulo. 1997 Nov-Dec;39(6):345-52.

PMID:
9674286
13.

The BISMiS 2011 special issue on prokaryotic systematics, a vital discipline entering a period of transition.

Sutcliffe IC, Trujillo ME, Goodfellow M.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):1-2. doi: 10.1007/s10482-011-9674-y. Epub 2011 Nov 12. No abstract available.

PMID:
22080412
14.

MultiMetEval: comparative and multi-objective analysis of genome-scale metabolic models.

Zakrzewski P, Medema MH, Gevorgyan A, Kierzek AM, Breitling R, Takano E.

PLoS One. 2012;7(12):e51511. doi: 10.1371/journal.pone.0051511. Epub 2012 Dec 14.

15.

MrBac: a web server for draft metabolic network reconstructions for bacteria.

Liao YC, Chen JC, Tsai MH, Tang YH, Chen FC, Hsiung CA.

Bioeng Bugs. 2011 Sep-Oct;2(5):284-7. doi: 10.4161/bbug.2.5.16113. Epub 2011 Sep 1.

PMID:
22008641
16.

Towards a prokaryotic genomic taxonomy.

Coenye T, Gevers D, Van de Peer Y, Vandamme P, Swings J.

FEMS Microbiol Rev. 2005 Apr;29(2):147-67. Review.

17.

Systems approaches to microbial communities and their functioning.

Röling WF, Ferrer M, Golyshin PN.

Curr Opin Biotechnol. 2010 Aug;21(4):532-8. doi: 10.1016/j.copbio.2010.06.007. Epub 2010 Jul 14. Review.

PMID:
20637597
18.

The 3Cs provide a novel concept of bacterial species: messages from the genome as illustrated by Salmonella.

Tang L, Liu SL.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):67-72. doi: 10.1007/s10482-011-9680-0. Epub 2011 Nov 24. Review.

PMID:
22113699
19.

Computing the shortest elementary flux modes in genome-scale metabolic networks.

de Figueiredo LF, Podhorski A, Rubio A, Kaleta C, Beasley JE, Schuster S, Planes FJ.

Bioinformatics. 2009 Dec 1;25(23):3158-65. doi: 10.1093/bioinformatics/btp564. Epub 2009 Sep 30.

PMID:
19793869
20.

Biodiversity, chemical diversity and drug discovery.

Singh SB, Pelaez F.

Prog Drug Res. 2008;65:141, 143-74. Review.

PMID:
18084915

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