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Items: 1 to 20 of 84

1.

Correlated evolution of nearby residues in Drosophilid proteins.

Callahan B, Neher RA, Bachtrog D, Andolfatto P, Shraiman BI.

PLoS Genet. 2011 Feb;7(2):e1001315. doi: 10.1371/journal.pgen.1001315. Epub 2011 Feb 24.

2.

Differential strengths of positive selection revealed by hitchhiking effects at small physical scales in Drosophila melanogaster.

Lee YC, Langley CH, Begun DJ.

Mol Biol Evol. 2014 Apr;31(4):804-16. doi: 10.1093/molbev/mst270. Epub 2013 Dec 20.

3.

Evolutionary patterns of amino acid substitutions in 12 Drosophila genomes.

Yampolsky LY, Bouzinier MA.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S10. doi: 10.1186/1471-2164-11-S4-S10.

4.

The length scale of selection in protein evolution.

Callahan BJ.

Fly (Austin). 2012 Jan-Mar;6(1):16-20. doi: 10.4161/fly.18305. Epub 2012 Jan 1.

PMID:
22198524
5.

Compensated deleterious mutations in insect genomes.

Kulathinal RJ, Bettencourt BR, Hartl DL.

Science. 2004 Nov 26;306(5701):1553-4. Epub 2004 Oct 21.

6.

The evolution of small insertions and deletions in the coding genes of Drosophila melanogaster.

Chong Z, Zhai W, Li C, Gao M, Gong Q, Ruan J, Li J, Jiang L, Lv X, Hungate E, Wu CI.

Mol Biol Evol. 2013 Dec;30(12):2699-708. doi: 10.1093/molbev/mst167. Epub 2013 Sep 26.

PMID:
24077769
7.

Major role of positive selection in the evolution of conservative segments of Drosophila proteins.

Bazykin GA, Kondrashov AS.

Proc Biol Sci. 2012 Sep 7;279(1742):3409-17. doi: 10.1098/rspb.2012.0776. Epub 2012 Jun 6.

8.

Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome.

Andolfatto P.

Genome Res. 2007 Dec;17(12):1755-62. Epub 2007 Nov 7. Erratum in: Genome Res. 2008 Jan;18(1):197.

9.

Insertions and deletions trigger adaptive walks in Drosophila proteins.

Leushkin EV, Bazykin GA, Kondrashov AS.

Proc Biol Sci. 2012 Aug 7;279(1740):3075-82. doi: 10.1098/rspb.2011.2571. Epub 2012 Mar 28.

10.

The Dca gene involved in cold adaptation in Drosophila melanogaster arose by duplication of the ancestral regucalcin gene.

Arboleda-Bustos CE, Segarra C.

Mol Biol Evol. 2011 Aug;28(8):2185-95. doi: 10.1093/molbev/msr040. Epub 2011 Feb 21.

PMID:
21339509
11.

Pervasive adaptive protein evolution apparent in diversity patterns around amino acid substitutions in Drosophila simulans.

Sattath S, Elyashiv E, Kolodny O, Rinott Y, Sella G.

PLoS Genet. 2011 Feb 10;7(2):e1001302. doi: 10.1371/journal.pgen.1001302.

12.

Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?

Zou Z, Zhang J.

Mol Biol Evol. 2015 Aug;32(8):2085-96. doi: 10.1093/molbev/msv091. Epub 2015 Apr 9.

13.
14.

Strong purifying selection at synonymous sites in D. melanogaster.

Lawrie DS, Messer PW, Hershberg R, Petrov DA.

PLoS Genet. 2013 May;9(5):e1003527. doi: 10.1371/journal.pgen.1003527. Epub 2013 May 30.

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Inferring the Frequency Spectrum of Derived Variants to Quantify Adaptive Molecular Evolution in Protein-Coding Genes of Drosophila melanogaster.

Keightley PD, Campos JL, Booker TR, Charlesworth B.

Genetics. 2016 Jun;203(2):975-84. doi: 10.1534/genetics.116.188102. Epub 2016 Apr 20.

18.

Evolution of protein-coding genes in Drosophila.

Larracuente AM, Sackton TB, Greenberg AJ, Wong A, Singh ND, Sturgill D, Zhang Y, Oliver B, Clark AG.

Trends Genet. 2008 Mar;24(3):114-23. doi: 10.1016/j.tig.2007.12.001. Epub 2008 Feb 4.

PMID:
18249460
19.
20.

Recurrent events of positive selection in independent Drosophila lineages at the spermatogenesis gene roughex.

Llopart A, Comeron JM.

Genetics. 2008 Jun;179(2):1009-20. doi: 10.1534/genetics.107.086231. Epub 2008 May 27.

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