Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 69

1.

The exchangeability of amino acids in proteins.

Yampolsky LY, Stoltzfus A.

Genetics. 2005 Aug;170(4):1459-72. Epub 2005 Jun 8.

2.

Untangling the effects of codon mutation and amino acid exchangeability.

Yampolsky LY, Stoltzfus A.

Pac Symp Biocomput. 2005:433-44.

3.
4.
5.

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.

Barenboim M, Masso M, Vaisman II, Jamison DC.

Proteins. 2008 Jun;71(4):1930-9. doi: 10.1002/prot.21838.

PMID:
18186470
6.
7.
8.

A metric model of amino acid substitution.

Xu W, Miranker DP.

Bioinformatics. 2004 May 22;20(8):1214-21. Epub 2004 Feb 10. Erratum in: Bioinformatics. 2004 Dec 12;20(18):3716.

PMID:
14871874
9.

Identification and characterization of JunD missense mutants that lack menin binding.

Knapp JI, Heppner C, Hickman AB, Burns AL, Chandrasekharappa SC, Collins FS, Marx SJ, Spiegel AM, Agarwal SK.

Oncogene. 2000 Sep 28;19(41):4706-12.

10.

Protein map: an alignment-free sequence comparison method based on various properties of amino acids.

Yu C, Cheng SY, He RL, Yau SS.

Gene. 2011 Oct 15;486(1-2):110-8. doi: 10.1016/j.gene.2011.07.002. Epub 2011 Jul 19.

PMID:
21803133
11.

ProtTest: selection of best-fit models of protein evolution.

Abascal F, Zardoya R, Posada D.

Bioinformatics. 2005 May 1;21(9):2104-5. Epub 2005 Jan 12.

PMID:
15647292
12.

Empirical and structural models for insertions and deletions in the divergent evolution of proteins.

Benner SA, Cohen MA, Gonnet GH.

J Mol Biol. 1993 Feb 20;229(4):1065-82.

PMID:
8445636
13.

Effects of p51/p63 missense mutations on transcriptional activities of p53 downstream gene promoters.

Kato S, Shimada A, Osada M, Ikawa S, Obinata M, Nakagawara A, Kanamaru R, Ishioka C.

Cancer Res. 1999 Dec 1;59(23):5908-11.

14.

Statistical significance of ungapped sequence alignments.

Alexandrov NN, Solovyev VV.

Pac Symp Biocomput. 1998:463-72.

15.

Predicting deleterious amino acid substitutions.

Ng PC, Henikoff S.

Genome Res. 2001 May;11(5):863-74.

16.

The compositional adjustment of amino acid substitution matrices.

Yu YK, Wootton JC, Altschul SF.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15688-93. Epub 2003 Dec 8.

17.
18.

Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.

Melo F, Marti-Renom MA.

Proteins. 2006 Jun 1;63(4):986-95.

PMID:
16506243
19.

Euclidian space and grouping of biological objects.

Grishin VN, Grishin NV.

Bioinformatics. 2002 Nov;18(11):1523-34.

PMID:
12424125
20.

How similar are amino acid mutations in human genetic diseases and evolution.

Wu H, Ma BG, Zhao JT, Zhang HY.

Biochem Biophys Res Commun. 2007 Oct 19;362(2):233-7. Epub 2007 Aug 2. Review.

PMID:
17681277

Supplemental Content

Support Center