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Items: 1 to 20 of 124

1.

Statistical model for large-scale peptide identification in databases from tandem mass spectra using SEQUEST.

López-Ferrer D, Martínez-Bartolomé S, Villar M, Campillos M, Martín-Maroto F, Vázquez J.

Anal Chem. 2004 Dec 1;76(23):6853-60.

PMID:
15571333
2.

Properties of average score distributions of SEQUEST: the probability ratio method.

Martínez-Bartolomé S, Navarro P, Martín-Maroto F, López-Ferrer D, Ramos-Fernández A, Villar M, García-Ruiz JP, Vázquez J.

Mol Cell Proteomics. 2008 Jun;7(6):1135-45. doi: 10.1074/mcp.M700239-MCP200. Epub 2008 Feb 25.

3.

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.

PMID:
15080748
4.

SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database.

Bafna V, Edwards N.

Bioinformatics. 2001;17 Suppl 1:S13-21.

PMID:
11472988
7.
8.

Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry: mapping the nuclear proteome of human fibroblasts.

Malmström J, Larsen K, Malmström L, Tufvesson E, Parker K, Marchese J, Williamson B, Patterson D, Martin S, Juhasz P, Westergren-Thorsson G, Marko-Varga G.

Electrophoresis. 2003 Nov;24(21):3806-14.

PMID:
14613209
9.

Oscore: a combined score to reduce false negative rates for peptide identification in tandem mass spectrometry analysis.

Shao C, Sun W, Li F, Yang R, Zhang L, Gao Y.

J Mass Spectrom. 2009 Jan;44(1):25-31. doi: 10.1002/jms.1466.

PMID:
18698557
11.
12.

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Keller A, Nesvizhskii AI, Kolker E, Aebersold R.

Anal Chem. 2002 Oct 15;74(20):5383-92.

PMID:
12403597
13.

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome.

Qian WJ, Liu T, Monroe ME, Strittmatter EF, Jacobs JM, Kangas LJ, Petritis K, Camp DG 2nd, Smith RD.

J Proteome Res. 2005 Jan-Feb;4(1):53-62.

PMID:
15707357
14.

Towards an automated approach for protein identification in proteome projects.

Traini M, Gooley AA, Ou K, Wilkins MR, Tonella L, Sanchez JC, Hochstrasser DF, Williams KL.

Electrophoresis. 1998 Aug;19(11):1941-9.

PMID:
9740054
15.

A computational method for assessing peptide- identification reliability in tandem mass spectrometry analysis with SEQUEST.

Razumovskaya J, Olman V, Xu D, Uberbacher EC, VerBerkmoes NC, Hettich RL, Xu Y.

Proteomics. 2004 Apr;4(4):961-9.

PMID:
15048978
16.

Proteome analysis of microdissected tumor tissue using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-tandem MS.

Wang Y, Rudnick PA, Evans EL, Li J, Zhuang Z, Devoe DL, Lee CS, Balgley BM.

Anal Chem. 2005 Oct 15;77(20):6549-56.

PMID:
16223239
17.

Peptide mass fingerprinting peak intensity prediction: extracting knowledge from spectra.

Gay S, Binz PA, Hochstrasser DF, Appel RD.

Proteomics. 2002 Oct;2(10):1374-91.

PMID:
12422355
18.

A dataset of human liver proteins identified by protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry.

Yan W, Lee H, Deutsch EW, Lazaro CA, Tang W, Chen E, Fausto N, Katze MG, Aebersold R.

Mol Cell Proteomics. 2004 Oct;3(10):1039-41. Epub 2004 Jul 21.

19.
20.

[A novel approach for peptide identification by tandem mass spectrometry].

Sheng QH, Tang HX, Xie T, Wang LS, Ding DF.

Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2003 Aug;35(8):734-40. Chinese.

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