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A reverse metabolic approach to weaning: in silico identification of immune-beneficial infant gut bacteria, mining their metabolism for prebiotic feeds and sourcing these feeds in the natural product space.

Michelini S, Balakrishnan B, Parolo S, Matone A, Mullaney JA, Young W, Gasser O, Wall C, Priami C, Lombardo R, Kussmann M.

Microbiome. 2018 Sep 21;6(1):171. doi: 10.1186/s40168-018-0545-x.


Grazing-induced microbiome alterations drive soil organic carbon turnover and productivity in meadow steppe.

Xun W, Yan R, Ren Y, Jin D, Xiong W, Zhang G, Cui Z, Xin X, Zhang R.

Microbiome. 2018 Sep 20;6(1):170. doi: 10.1186/s40168-018-0544-y.


The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch.

Michel AJ, Ward LM, Goffredi SK, Dawson KS, Baldassarre DT, Brenner A, Gotanda KM, McCormack JE, Mullin SW, O'Neill A, Tender GS, Uy JAC, Yu K, Orphan VJ, Chaves JA.

Microbiome. 2018 Sep 19;6(1):167. doi: 10.1186/s40168-018-0555-8.


Metatranscriptomics reveals a differential temperature effect on the structural and functional organization of the anaerobic food web in rice field soil.

Peng J, Wegner CE, Bei Q, Liu P, Liesack W.

Microbiome. 2018 Sep 19;6(1):169. doi: 10.1186/s40168-018-0546-9.


A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments.

Vavourakis CD, Andrei AS, Mehrshad M, Ghai R, Sorokin DY, Muyzer G.

Microbiome. 2018 Sep 19;6(1):168. doi: 10.1186/s40168-018-0548-7.


Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake.

Arora-Williams K, Olesen SW, Scandella BP, Delwiche K, Spencer SJ, Myers EM, Abraham S, Sooklal A, Preheim SP.

Microbiome. 2018 Sep 18;6(1):165. doi: 10.1186/s40168-018-0556-7.


Predicting recurrence of Clostridium difficile infection following encapsulated fecal microbiota transplantation.

Staley C, Kaiser T, Vaughn BP, Graiziger CT, Hamilton MJ, Rehman TU, Song K, Khoruts A, Sadowsky MJ.

Microbiome. 2018 Sep 18;6(1):166. doi: 10.1186/s40168-018-0549-6.


Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate.

Bredon M, Dittmer J, Noël C, Moumen B, Bouchon D.

Microbiome. 2018 Sep 17;6(1):162. doi: 10.1186/s40168-018-0536-y.


Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.

Jarett JK, Nayfach S, Podar M, Inskeep W, Ivanova NN, Munson-McGee J, Schulz F, Young M, Jay ZJ, Beam JP, Kyrpides NC, Malmstrom RR, Stepanauskas R, Woyke T.

Microbiome. 2018 Sep 17;6(1):161. doi: 10.1186/s40168-018-0539-8.


Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing.

Flaherty BR, Talundzic E, Barratt J, Kines KJ, Olsen C, Lane M, Sheth M, Bradbury RS.

Microbiome. 2018 Sep 17;6(1):164. doi: 10.1186/s40168-018-0540-2.


Longitudinal development of the dust microbiome in a newly opened Norwegian kindergarten.

Nygaard AB, Charnock C.

Microbiome. 2018 Sep 15;6(1):159. doi: 10.1186/s40168-018-0553-x.


MetaWRAP-a flexible pipeline for genome-resolved metagenomic data analysis.

Uritskiy GV, DiRuggiero J, Taylor J.

Microbiome. 2018 Sep 15;6(1):158. doi: 10.1186/s40168-018-0541-1.


Translating research to policy at the NCSE 2017 symposium "Microbiology of the Built Environment: Implications for Health and Design".

Bope A, Weir MH, Pruden A, Morowitz M, Mitchell J, Dannemiller KC.

Microbiome. 2018 Sep 15;6(1):160. doi: 10.1186/s40168-018-0552-y.


Root exudates drive the soil-borne legacy of aboveground pathogen infection.

Yuan J, Zhao J, Wen T, Zhao M, Li R, Goossens P, Huang Q, Bai Y, Vivanco JM, Kowalchuk GA, Berendsen RL, Shen Q.

Microbiome. 2018 Sep 12;6(1):156. doi: 10.1186/s40168-018-0537-x.


Dichotomous development of the gut microbiome in preterm infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Microbiome. 2018 Sep 12;6(1):157. doi: 10.1186/s40168-018-0547-8.


Quantification of variation and the impact of biomass in targeted 16S rRNA gene sequencing studies.

Bender JM, Li F, Adisetiyo H, Lee D, Zabih S, Hung L, Wilkinson TA, Pannaraj PS, She RC, Bard JD, Tobin NH, Aldrovandi GM.

Microbiome. 2018 Sep 10;6(1):155. doi: 10.1186/s40168-018-0543-z.


High-resolution ISR amplicon sequencing reveals personalized oral microbiome.

Mukherjee C, Beall CJ, Griffen AL, Leys EJ.

Microbiome. 2018 Sep 5;6(1):153. doi: 10.1186/s40168-018-0535-z.


Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization.

Chang HW, Yan D, Singh R, Liu J, Lu X, Ucmak D, Lee K, Afifi L, Fadrosh D, Leech J, Vasquez KS, Lowe MM, Rosenblum MD, Scharschmidt TC, Lynch SV, Liao W.

Microbiome. 2018 Sep 5;6(1):154. doi: 10.1186/s40168-018-0533-1.


Enterobacteriaceae are essential for the modulation of colitis severity by fungi.

Sovran B, Planchais J, Jegou S, Straube M, Lamas B, Natividad JM, Agus A, Dupraz L, Glodt J, Da Costa G, Michel ML, Langella P, Richard ML, Sokol H.

Microbiome. 2018 Sep 1;6(1):152. doi: 10.1186/s40168-018-0538-9.

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