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Items: 1 to 20 of 420

1.

SL-quant: A fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data.

Yague-Sanz C, Hermand D.

Gigascience. 2018 Jul 11. doi: 10.1093/gigascience/giy084. [Epub ahead of print]

PMID:
30010768
2.

Clustering trees: a visualisation for evaluating clusterings at multiple resolutions.

Zappia L, Oshlack A.

Gigascience. 2018 Jul 11. doi: 10.1093/gigascience/giy083. [Epub ahead of print]

PMID:
30010766
3.

A similarity-based approach to leverage multi-cohort medical data on the diagnosis and prognosis of Alzheimer's disease.

Zhang H, Zhu F, Dodge HH, Higgins GA, Omenn GS, Guan Y; Alzheimer's Disease Neuroimaging Initiative.

Gigascience. 2018 Jul 11. doi: 10.1093/gigascience/giy085. [Epub ahead of print]

PMID:
30010762
4.

Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.

Sohn JI, Nam K, Hong H, Kim JM, Lim D, Lee KT, Do YJ, Cho CY, Kim N, Chai HH, Nam JW.

Gigascience. 2018 Jul 11. doi: 10.1093/gigascience/giy086. [Epub ahead of print]

PMID:
30010758
5.

Chromosome-level reference genome of the Siamese fighting fish Betta splendens, a model species for the study of aggression.

Fan G, Chan J, Ma K, Yang B, Zhang H, Yang X, Shi C, Law H, Ren Z, Xu Q, Liu Q, Wang J, Chen W, Shao L, Gonçalves D, Ramos A, Cardoso SD, Guo M, Cai J, Xu X, Wang J, Yang H, Liu X, Wang Y.

Gigascience. 2018 Jul 11. doi: 10.1093/gigascience/giy087. [Epub ahead of print]

PMID:
30010754
6.

SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution.

Xia LC, Ai D, Lee H, Andor N, Li C, Zhang NR, Ji HP.

Gigascience. 2018 Jul 5. doi: 10.1093/gigascience/giy081. [Epub ahead of print]

PMID:
29982625
7.

Nighres: Processing tools for high-resolution neuroimaging.

Huntenburg JM, Steele CJ, Bazin PL.

Gigascience. 2018 Jul 4. doi: 10.1093/gigascience/giy082. [Epub ahead of print]

PMID:
29982501
8.

Clinker: visualising fusion genes detected in RNA-seq data.

Schmidt BM, Davidson NM, Hawkins ADK, Bartolo R, Majewski IJ, Ekert PG, Oshlack A.

Gigascience. 2018 Jul 4. doi: 10.1093/gigascience/giy079. [Epub ahead of print]

PMID:
29982439
9.

Where is the human in the data? A guide to ethical data use.

Ballantyne A.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy076.

PMID:
29961892
10.

KREAP: an automated Galaxy platform to quantify in vitro re-epithelialization kinetics.

Fernandez-Gutierrez MM, van Zessen DBH, van Baarlen P, Kleerebezem M, Stubbs AP.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy078.

PMID:
29961849
11.

Experimenting with Reproducibility: a case study of Robustness in Bioinformatics.

Kim YM, Poline JB, Dumas G.

Gigascience. 2018 Jun 28. doi: 10.1093/gigascience/giy077. [Epub ahead of print]

PMID:
29961842
12.

A workflow for simplified analysis of ATAC-cap-seq data in R.

Shrestha RK, Ding P, Jones JDG, MacLean D.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy080.

PMID:
29961827
13.

High-quality assembly of the reference genome for scarlet sage, Salvia splendens, an economically important ornamental plant.

Dong AX, Xin HB, Li ZJ, Liu H, Sun YQ, Nie S, Zhao ZN, Cui RF, Zhang RG, Yun QZ, Wang XN, Maghuly F, Porth I, Cong RC, Mao JF.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy068.

14.

Genome of an allotetraploid wild peanut Arachis monticola: a de novo assembly.

Yin D, Ji C, Ma X, Li H, Zhang W, Li S, Liu F, Zhao K, Li F, Li K, Ning L, He J, Wang Y, Zhao F, Xie Y, Zheng H, Zhang X, Zhang Y, Zhang J.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy066.

15.

Binning enables efficient host genome reconstruction in cnidarian holobionts.

Celis JS, Wibberg D, Ramírez-Portilla C, Rupp O, Sczyrba A, Winkler A, Kalinowski J, Wilke T.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy075.

PMID:
29917104
16.

Arabidopsis phenotyping through geometric morphometrics.

Manacorda CA, Asurmendi S.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy073.

17.

Long-read sequencing and de novo genome assembly of Ammopiptanthus nanus, a desert shrub.

Gao F, Wang X, Li X, Xu M, Li H, Abla M, Sun H, Wei S, Feng J, Zhou Y.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy074.

PMID:
29917074
18.

YAMP: a containerized workflow enabling reproducibility in metagenomics research.

Visconti A, Martin TC, Falchi M.

Gigascience. 2018 Jul 1;7(7). doi: 10.1093/gigascience/giy072.

PMID:
29917068
19.
20.

MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.

Simon LM, Karg S, Westermann AJ, Engel M, Elbehery AHA, Hense B, Heinig M, Deng L, Theis FJ.

Gigascience. 2018 Jun 1;7(6). doi: 10.1093/gigascience/giy070.

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