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Items: 1 to 20 of 405


Ontoserver: a syndicated terminology server.

Metke-Jimenez A, Steel J, Hansen D, Lawley M.

J Biomed Semantics. 2018 Sep 17;9(1):24. doi: 10.1186/s13326-018-0191-z.


Using predicate and provenance information from a knowledge graph for drug efficacy screening.

Vlietstra WJ, Vos R, Sijbers AM, van Mulligen EM, Kors JA.

J Biomed Semantics. 2018 Sep 6;9(1):23. doi: 10.1186/s13326-018-0189-6.


Representing vaccine misinformation using ontologies.

Amith M, Tao C.

J Biomed Semantics. 2018 Aug 31;9(1):22. doi: 10.1186/s13326-018-0190-0.


Biomedical ontology alignment: an approach based on representation learning.

Kolyvakis P, Kalousis A, Smith B, Kiritsis D.

J Biomed Semantics. 2018 Aug 15;9(1):21. doi: 10.1186/s13326-018-0187-8.


EAPB: entropy-aware path-based metric for ontology quality.

Shen Y, Chen D, Tang B, Yang M, Lei K.

J Biomed Semantics. 2018 Aug 10;9(1):20. doi: 10.1186/s13326-018-0188-7.


Adverse event detection by integrating twitter data and VAERS.

Wang J, Zhao L, Ye Y, Zhang Y.

J Biomed Semantics. 2018 Jun 20;9(1):19. doi: 10.1186/s13326-018-0184-y.


Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns.

Barros JM, Duggan J, Rebholz-Schuhmann D.

J Biomed Semantics. 2018 Jun 12;9(1):18. doi: 10.1186/s13326-018-0186-9.


Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs.

Hur J, Özgür A, He Y.

J Biomed Semantics. 2018 Jun 7;9(1):17. doi: 10.1186/s13326-018-0185-x.


Querying archetype-based EHRs by search ontology-based XPath engineering.

Kropf S, Uciteli A, Schierle K, Krücken P, Denecke K, Herre H.

J Biomed Semantics. 2018 May 11;9(1):16. doi: 10.1186/s13326-018-0180-2.


Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse.

Judkins J, Tay-Sontheimer J, Boyce RD, Brochhausen M.

J Biomed Semantics. 2018 May 9;9(1):15. doi: 10.1186/s13326-018-0183-z.


GGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes.

Solovieva E, Shikanai T, Fujita N, Narimatsu H.

J Biomed Semantics. 2018 Apr 18;9(1):14. doi: 10.1186/s13326-018-0182-0.


Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature.

Arguello Casteleiro M, Demetriou G, Read W, Fernandez Prieto MJ, Maroto N, Maseda Fernandez D, Nenadic G, Klein J, Keane J, Stevens R.

J Biomed Semantics. 2018 Apr 12;9(1):13. doi: 10.1186/s13326-018-0181-1.


Clinical Natural Language Processing in languages other than English: opportunities and challenges.

Névéol A, Dalianis H, Velupillai S, Savova G, Zweigenbaum P.

J Biomed Semantics. 2018 Mar 30;9(1):12. doi: 10.1186/s13326-018-0179-8. Review.


Matching biomedical ontologies based on formal concept analysis.

Zhao M, Zhang S, Li W, Chen G.

J Biomed Semantics. 2018 Mar 19;9(1):11. doi: 10.1186/s13326-018-0178-9.


Using OWL reasoning to support the generation of novel gene sets for enrichment analysis.

Osumi-Sutherland DJ, Ponta E, Courtot M, Parkinson H, Badi L.

J Biomed Semantics. 2018 Feb 14;9(1):10. doi: 10.1186/s13326-018-0175-z.


Supporting shared hypothesis testing in the biomedical domain.

Agibetov A, Jiménez-Ruiz E, Ondrésik M, Solimando A, Banerjee I, Guerrini G, Catalano CE, Oliveira JM, Patanè G, Reis RL, Spagnuolo M.

J Biomed Semantics. 2018 Feb 8;9(1):9. doi: 10.1186/s13326-018-0177-x.


DMTO: a realistic ontology for standard diabetes mellitus treatment.

El-Sappagh S, Kwak D, Ali F, Kwak KS.

J Biomed Semantics. 2018 Feb 6;9(1):8. doi: 10.1186/s13326-018-0176-y.


Exploiting graph kernels for high performance biomedical relation extraction.

Panyam NC, Verspoor K, Cohn T, Ramamohanarao K.

J Biomed Semantics. 2018 Jan 30;9(1):7. doi: 10.1186/s13326-017-0168-3.


OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system.

Senderov V, Simov K, Franz N, Stoev P, Catapano T, Agosti D, Sautter G, Morris RA, Penev L.

J Biomed Semantics. 2018 Jan 18;9(1):5. doi: 10.1186/s13326-017-0174-5.


MIRO: guidelines for minimum information for the reporting of an ontology.

Matentzoglu N, Malone J, Mungall C, Stevens R.

J Biomed Semantics. 2018 Jan 18;9(1):6. doi: 10.1186/s13326-017-0172-7. Review.

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