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Items: 1 to 20 of 164

1.

SOV_refine: A further refined definition of segment overlap score and its significance for protein structure similarity.

Liu T, Wang Z.

Source Code Biol Med. 2018 Apr 20;13:1. doi: 10.1186/s13029-018-0068-7. eCollection 2018.

2.

FLIM-FRET analyzer: open source software for automation of lifetime-based FRET analysis.

Kim J, Tsoy Y, Persson J, Grailhe R.

Source Code Biol Med. 2017 Nov 3;12:7. doi: 10.1186/s13029-017-0067-0. eCollection 2017.

3.

goSTAG: gene ontology subtrees to tag and annotate genes within a set.

Bennett BD, Bushel PR.

Source Code Biol Med. 2017 Apr 13;12:6. doi: 10.1186/s13029-017-0066-1. eCollection 2017.

4.

LitDB - Keeping Track of Research Papers From Your Institute Made Simple.

Bethune J, Kraemer L, Thomsen I, Keller A, Ellinghaus D, Franke A.

Source Code Biol Med. 2017 Mar 21;12:5. doi: 10.1186/s13029-017-0065-2. eCollection 2017.

5.

NET: a new framework for the vectorization and examination of network data.

Lasser J, Katifori E.

Source Code Biol Med. 2017 Feb 8;12:4. doi: 10.1186/s13029-017-0064-3. eCollection 2017.

6.

Algorithm and software to automatically identify latency and amplitude features of local field potentials recorded in electrophysiological investigation.

Rubega M, Cecchetto C, Vassanelli S, Sparacino G.

Source Code Biol Med. 2017 Feb 7;12:3. doi: 10.1186/s13029-017-0062-5. eCollection 2017.

7.

DEApp: an interactive web interface for differential expression analysis of next generation sequence data.

Li Y, Andrade J.

Source Code Biol Med. 2017 Feb 3;12:2. doi: 10.1186/s13029-017-0063-4. eCollection 2017.

8.

Erratum to: A bedr way of genomic interval processing.

Haider S, Waggott D, Lalonde E, Fung C, Liu FF, Boutros PC.

Source Code Biol Med. 2017 Jan 9;12:1. doi: 10.1186/s13029-016-0061-y. eCollection 2017.

9.

A bedr way of genomic interval processing.

Haider S, Waggott D, Lalonde E, Fung C, Liu FF, Boutros PC.

Source Code Biol Med. 2016 Dec 15;11:14. doi: 10.1186/s13029-016-0059-5. eCollection 2016. Erratum in: Source Code Biol Med. 2017 Jan 9;12 :1.

10.

PureCN: copy number calling and SNV classification using targeted short read sequencing.

Riester M, Singh AP, Brannon AR, Yu K, Campbell CD, Chiang DY, Morrissey MP.

Source Code Biol Med. 2016 Dec 15;11:13. doi: 10.1186/s13029-016-0060-z. eCollection 2016.

11.

cljam: a library for handling DNA sequence alignment/map (SAM) with parallel processing.

Takeuchi T, Yamada A, Aoki T, Nishimura K.

Source Code Biol Med. 2016 Aug 17;11:12. doi: 10.1186/s13029-016-0058-6. eCollection 2016.

12.

TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data.

Clark LV, Sacks EJ.

Source Code Biol Med. 2016 Jul 11;11:11. doi: 10.1186/s13029-016-0057-7. eCollection 2016.

13.

A new tool for prioritization of sequence variants from whole exome sequencing data.

Glanzmann B, Herbst H, Kinnear CJ, Möller M, Gamieldien J, Bardien S.

Source Code Biol Med. 2016 Jul 1;11:10. doi: 10.1186/s13029-016-0056-8. eCollection 2016.

14.

Log::ProgramInfo: A Perl module to collect and log data for bioinformatics pipelines.

Macdonald JM, Boutros PC.

Source Code Biol Med. 2016 Jun 24;11:9. doi: 10.1186/s13029-016-0055-9. eCollection 2016.

15.

SV-STAT accurately detects structural variation via alignment to reference-based assemblies.

Davis CF, Ritter DI, Wheeler DA, Wang H, Ding Y, Dugan SP, Bainbridge MN, Muzny DM, Rao PH, Man TK, Plon SE, Gibbs RA, Lau CC.

Source Code Biol Med. 2016 Jun 18;11:8. doi: 10.1186/s13029-016-0051-0. eCollection 2016.

16.

Implementation and clinical application of a deformation method for fast simulation of biological tissue formed by fibers and fluid.

Sardinha AG, Oyama CN, de Mendonça Maroja A, Costa IF.

Source Code Biol Med. 2016 Apr 15;11:7. doi: 10.1186/s13029-016-0054-x. eCollection 2016.

17.

MM2S: personalized diagnosis of medulloblastoma patients and model systems.

Gendoo DM, Haibe-Kains B.

Source Code Biol Med. 2016 Apr 11;11:6. doi: 10.1186/s13029-016-0053-y. eCollection 2016.

18.

A flexible tool to plot a genomic map for single nucleotide polymorphisms.

Zhang F.

Source Code Biol Med. 2016 Apr 2;11:5. doi: 10.1186/s13029-016-0052-z. eCollection 2016.

19.

A generic schema and data collection forms applicable to diverse entomological studies of mosquitoes.

Kiware SS, Russell TL, Mtema ZJ, Malishee AD, Chaki P, Lwetoijera D, Chanda J, Chinula D, Majambere S, Gimnig JE, Smith TA, Killeen GF.

Source Code Biol Med. 2016 Mar 28;11:4. doi: 10.1186/s13029-016-0050-1. eCollection 2016.

20.

Conserved antigenic sites between MERS-CoV and Bat-coronavirus are revealed through sequence analysis.

Sharmin R, Islam AB.

Source Code Biol Med. 2016 Mar 9;11:3. doi: 10.1186/s13029-016-0049-7. eCollection 2016.

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