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Items: 1 to 20 of 455

1.

A hybrid multiscale model for investigating tumor angiogenesis and its response to cell-based therapy.

Hendrata M, Sudiono J.

In Silico Biol. 2017 Dec 5. doi: 10.3233/ISB-170469. [Epub ahead of print]

PMID:
29226860
2.

Simulation of diffusion using a modular cell dynamic simulation system.

Leberecht C, Heinke F, Labudde D.

In Silico Biol. 2017;12(3-4):129-142. doi: 10.3233/ISB-170468.

PMID:
28482632
3.

Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach.

Yildirim N, Aktas ME, Ozcan SN, Akbas E, Ay A.

In Silico Biol. 2017;12(3-4):95-127. doi: 10.3233/ISB-160467.

PMID:
27497472
4.

Cellular automata model for human articular chondrocytes migration, proliferation and cell death: An in vitro validation.

Vaca-González JJ, Gutiérrez ML, Guevara JM, Garzón-Alvarado DA.

In Silico Biol. 2017;12(3-4):83-93. doi: 10.3233/ISB-150466.

PMID:
26756921
5.

A simple model for Lutz and Bujard's controllable promoters and its application for analyzing a simple genetic oscillator.

Zamora-Chimal CG, Zeron ES.

In Silico Biol. 2015;12(1-2):69-82. doi: 10.3233/ISB-150465.

6.

Exploiting stoichiometric redundancies for computational efficiency and network reduction.

Ingalls BP, Bembenek E.

In Silico Biol. 2015;12(1-2):55-67. doi: 10.3233/ISB-140464. Review.

7.

The utility of simple mathematical models in understanding gene regulatory dynamics.

Mackey MC, Santillán M, Tyran-Kamińska M, Zeron ES.

In Silico Biol. 2015;12(1-2):23-53. doi: 10.3233/ISB-140463. Review.

8.
9.

Limits of computational biology.

Bray D.

In Silico Biol. 2015;12(1-2):1-7. doi: 10.3233/ISB-140461. Review.

10.

miRNA-mRNA network detects hub mRNAs and cancer specific miRNAs in lung cancer.

Devaraj S, Natarajan J.

In Silico Biol. 2011-2012;11(5-6):281-95. doi: 10.3233/ISB-2012-0444.

PMID:
23202429
11.

Molecular modeling and docking analysis of beta-lactamases with inhibitors: a comparative study.

Danishuddin M, Khan AU.

In Silico Biol. 2011-2012;11(5-6):273-80. doi: 10.3233/ISB-2012-0443.

PMID:
23202428
12.

Numerical detection, measuring and analysis of differential interferon resistance for individual HCV intra-host variants and its influence on the therapy response.

Skums P, Campo DS, Dimitrova Z, Vaughan G, Lau DT, Khudyakov Y.

In Silico Biol. 2011-2012;11(5-6):263-9. doi: 10.3233/ISB-2012-0460.

PMID:
23202427
13.

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.

Mangul S, Caciula A, Glebova O, Mandoiu I, Zelikovsky A.

In Silico Biol. 2011-2012;11(5-6):251-61. doi: 10.3233/ISB-2012-0459.

PMID:
23202426
14.

Reconstructing viral quasispecies from NGS amplicon reads.

Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A.

In Silico Biol. 2011-2012;11(5-6):237-49. doi: 10.3233/ISB-2012-0458.

PMID:
23202425
15.

Mixture model analysis reflecting dynamics of the population diversity of 2009 pandemic H1N1 influenza virus.

Long LP, Yuan C, Cai Z, Xu H, Wan XF.

In Silico Biol. 2011-2012;11(5-6):225-36. doi: 10.3233/ISB-2012-0457.

16.

Coordinated evolution among hepatitis C virus genomic sites is coupled to host factors and resistance to interferon.

Lara J, Tavis JE, Donlin MJ, Lee WM, Yuan HJ, Pearlman BL, Vaughan G, Forbi JC, Xia GL, Khudyakov YE.

In Silico Biol. 2011-2012;11(5-6):213-24. doi: 10.3233/ISB-2012-0456.

PMID:
23202423
17.

Association of antigenic properties to structure of the hepatitis C virus NS3 protein.

Lara J, Khudyakov Y.

In Silico Biol. 2011-2012;11(5-6):203-12. doi: 10.3233/ISB-2012-0455.

PMID:
23202422
18.

QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.

Huang A, Kantor R, DeLong A, Schreier L, Istrail S.

In Silico Biol. 2011-2012;11(5-6):193-201. doi: 10.3233/ISB-2012-0454.

19.

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.

Dimitrova Z, Campo DS, Ramachandran S, Vaughan G, Ganova-Raeva L, Lin Y, Forbi JC, Xia G, Skums P, Pearlman B, Khudyakov Y.

In Silico Biol. 2011-2012;11(5-6):183-92. doi: 10.3233/ISB-2012-0453.

PMID:
23202420
20.

Coordinated evolution of the hepatitis B virus polymerase.

Campo DS, Dimitrova Z, Lara J, Purdy M, Thai H, Ramachandran S, Ganova-Raeva L, Zhai X, Forbi JC, Teo CG, Khudyakov Y.

In Silico Biol. 2011-2012;11(5-6):175-82. doi: 10.3233/ISB-2012-0452.

PMID:
23202419

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