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A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging.

Kirlik G, Gullapalli R, D'Souza W, Md Daud Iqbal G, Naslund M, Wong J, Papadimitrou J, Roys S, Mistry N, Zhang H.

Cancer Inform. 2018 Jul 10;17:1176935118786260. doi: 10.1177/1176935118786260. eCollection 2018.


Computational Model for Predicting the Relationship Between Micro-RNAs and Their Target Messenger RNAs in Breast and Colon Cancers.

Kim S.

Cancer Inform. 2018 Jul 2;17:1176935118785145. doi: 10.1177/1176935118785145. eCollection 2018.


A Functional Spatial Analysis Platform for Discovery of Immunological Interactions Predictive of Low-Grade to High-Grade Transition of Pancreatic Intraductal Papillary Mucinous Neoplasms.

Barua S, Solis L, Parra ER, Uraoka N, Jiang M, Wang H, Rodriguez-Canales J, Wistuba I, Maitra A, Sen S, Rao A.

Cancer Inform. 2018 Jun 28;17:1176935118782880. doi: 10.1177/1176935118782880. eCollection 2018. Review.


Chromatic: WebAssembly-Based Cancer Genome Viewer.

Finney R, Meerzaman D.

Cancer Inform. 2018 Apr 27;17:1176935118771972. doi: 10.1177/1176935118771972. eCollection 2018. Review.


Phenotype Classification Using Moment Features of Single-Cell Data.

Sima C, Hua J, Bittner ML, Kim S, Dougherty ER.

Cancer Inform. 2018 Apr 23;17:1176935118771701. doi: 10.1177/1176935118771701. eCollection 2018.


Decomposing the Apoptosis Pathway Into Biologically Interpretable Principal Components.

Wang M, Kornblau SM, Coombes KR.

Cancer Inform. 2018 May 9;17:1176935118771082. doi: 10.1177/1176935118771082. eCollection 2018.


A Bayesian Gene-Based Genome-Wide Association Study Analysis of Osteosarcoma Trio Data Using a Hierarchically Structured Prior.

Yang Y, Basu S, Mirabello L, Spector L, Zhang L.

Cancer Inform. 2018 May 21;17:1176935118775103. doi: 10.1177/1176935118775103. eCollection 2018.


The MAPK-Signaling Pathway in Colorectal Cancer: Dysregulated Genes and Their Association With MicroRNAs.

Slattery ML, Mullany LE, Sakoda LC, Wolff RK, Samowitz WS, Herrick JS.

Cancer Inform. 2018 Mar 26;17:1176935118766522. doi: 10.1177/1176935118766522. eCollection 2018.


Thyroid Nodule Management: Thyroid-Stimulating Hormone, Ultrasound, and Cytological Classification System for Predicting Malignancy.

Al Dawish MA, Alwin Robert A, Thabet MA, Braham R.

Cancer Inform. 2018 Mar 19;17:1176935118765132. doi: 10.1177/1176935118765132. eCollection 2018.


Guest Editorial-Special Collection Topic: Statistical Systems Theory in Cancer Modeling, Diagnosis, and Therapy.

Dougherty ER, Boulesteix AL, Dalton LA, Zhang M.

Cancer Inform. 2018 Mar 5;17:1176935118760944. doi: 10.1177/1176935118760944. eCollection 2018.


Potential Breast Anticancer Drug Targets Revealed by Differential Gene Regulatory Network Analysis and Molecular Docking: Neoadjuvant Docetaxel Drug as a Case Study.

Aloraini A, ElSawy KM.

Cancer Inform. 2018 Feb 8;17:1176935118755354. doi: 10.1177/1176935118755354. eCollection 2018.


Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer.

Natanzon Y, Earp M, Cunningham JM, Kalli KR, Wang C, Armasu SM, Larson MC, Bowtell DD, Garsed DW, Fridley BL, Winham SJ, Goode EL.

Cancer Inform. 2018 Feb 1;17:1176935118755341. doi: 10.1177/1176935118755341. eCollection 2018.


CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data.

Song L, Bhuvaneshwar K, Wang Y, Feng Y, Shih IM, Madhavan S, Gusev Y.

Cancer Inform. 2017 Dec 13;16:1176935117746637. doi: 10.1177/1176935117746637. eCollection 2017.


Selection of X-chromosome Inactivation Model.

Wang J, Talluri R, Shete S.

Cancer Inform. 2017 Dec 17;16:1176935117747272. doi: 10.1177/1176935117747272. eCollection 2017.


Longitudinal Transcriptional Response of Glycosylation-Related Genes, Regulators, and Targets in Cancer Cell Lines Treated With 11 Antitumor Agents.

Krushkal J, Zhao Y, Hose C, Monks A, Doroshow JH, Simon R.

Cancer Inform. 2017 Dec 15;16:1176935117747259. doi: 10.1177/1176935117747259. eCollection 2017.


ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women.

Kinney N, Varghese RT, Anandakrishnan R, Garner HRS.

Cancer Inform. 2017 Dec 13;16:1176935117746644. doi: 10.1177/1176935117746644. eCollection 2017.


Nonmonotonic Pathway Gene Expression Analysis Reveals Oncogenic Role of p27/Kip1 at Intermediate Dose.

Nguyen HH, Tilton SC, Kemp CJ, Song M.

Cancer Inform. 2017 Nov 13;16:1176935117740132. doi: 10.1177/1176935117740132. eCollection 2017.


Gene-Set Reduction for Analysis of Major and Minor Gleason Scores Based on Differential Gene-Set Expressions and Biological Pathways in Prostate Cancer.

Dinu I, Poudel S, Pyne S.

Cancer Inform. 2017 Sep 11;16:1176935117730016. doi: 10.1177/1176935117730016. eCollection 2017.


xSyn: A Software Tool for Identifying Sophisticated 3-Way Interactions From Cancer Expression Data.

Bandyopadhyay B, Chanda V, Wang Y.

Cancer Inform. 2017 Aug 28;16:1176935117728516. doi: 10.1177/1176935117728516. eCollection 2017.


Adaptive Multiview Nonnegative Matrix Factorization Algorithm for Integration of Multimodal Biomedical Data.

Ray B, Liu W, Fenyƶ D.

Cancer Inform. 2017 Aug 18;16:1176935117725727. doi: 10.1177/1176935117725727. eCollection 2017.

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