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Items: 1 to 20 of 4587


Identification of human silencers by correlating cross-tissue epigenetic profiles and gene expression.

Huang D, Petrykowska HM, Miller BF, Elnitski L, Ovcharenko I.

Genome Res. 2019 Mar 18. doi: 10.1101/gr.247007.118. [Epub ahead of print]


Chromothripsis during telomere crisis is independent of NHEJ and consistent with a replicative origin.

Cleal K, Jones RE, Grimstead JW, Hendrickson EA, Baird DM.

Genome Res. 2019 Mar 14. pii: gr.240705.118. doi: 10.1101/gr.240705.118. [Epub ahead of print]


A virome-wide clonal integration analysis platform for discovering cancer viral etiology.

Chen X, Kost J, Sulovari A, Wong N, Liang W, Cao J, Li D.

Genome Res. 2019 Mar 14. pii: gr.242529.118. doi: 10.1101/gr.242529.118. [Epub ahead of print]


GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes.

Shao Y, Chen C, Shen H, He BZ, Yu D, Jiang S, Zhao S, Gao Z, Zhu Z, Chen X, Fu Y, Chen H, Gao G, Long M, Zhang YE.

Genome Res. 2019 Mar 12. doi: 10.1101/gr.238733.118. [Epub ahead of print]


Remodeling of epigenome and transcriptome landscapes with aging in mice reveals widespread induction of inflammatory responses.

Benayoun BA, Pollina EA, Singh PP, Mahmoudi S, Harel I, Casey KM, Dulken BW, Kundaje A, Brunet A.

Genome Res. 2019 Mar 11. doi: 10.1101/gr.240093.118. [Epub ahead of print]


Coexpression patterns define epigenetic regulators associated with neurological dysfunction.

Boukas L, Havrilla JM, Hickey PF, Quinlan AR, Bjornsson HT, Hansen KD.

Genome Res. 2019 Mar 11. doi: 10.1101/gr.239442.118. [Epub ahead of print]


Accurate analysis of genuine CRISPR editing events with ampliCan.

Labun K, Guo X, Chavez A, Church G, Gagnon JA, Valen E.

Genome Res. 2019 Mar 8. pii: gr.244293.118. doi: 10.1101/gr.244293.118. [Epub ahead of print]


Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans.

Zhivagui M, Ng AWT, Ardin M, Churchwell MI, Pandey M, Renard C, Villar S, Cahais V, Robitaille A, Bouaoun L, Heguy A, Guyton KZ, Stampfer MR, McKay J, Hollstein M, Olivier M, Rozen SG, Beland FA, Korenjak M, Zavadil J.

Genome Res. 2019 Mar 7. doi: 10.1101/gr.242453.118. [Epub ahead of print]


Differences in firing efficiency, chromatin and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins.

Sequeira-Mendes J, Vergara Z, Peiro R, Morata J, Araguez I, Costas C, Mendez Giraldez R, Casacuberta JM, Bastolla U, Gutierrez C.

Genome Res. 2019 Mar 7. pii: gr.240986.118. doi: 10.1101/gr.240986.118. [Epub ahead of print]


Long-read single-molecule maps of the functional methylome.

Sharim H, Grunwald A, Gabrieli T, Michaeli Y, Margalit S, Torchinsky D, Arielly R, Nifker G, Juhasz M, Gularek F, Almalvez M, Dufault B, Chandra SS, Liu A, Bhattacharya S, Chen YW, Vilain E, Wagner KR, Pevsner J, Reifenberger J, Lam ET, Hastie AR, Cao H, Barseghyan H, Weinhold E, Ebenstein Y.

Genome Res. 2019 Mar 7. doi: 10.1101/gr.240739.118. [Epub ahead of print]


Corrigendum: Inherited DNA methylation primes the establishment of accessible chromatin during genome activation.

Liu G, Wang W, Hu S, Wang X, Zhang Y.

Genome Res. 2019 Mar;29(3):520. doi: 10.1101/gr.248732.119. No abstract available.


Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.

Sun K, Jiang P, Cheng SH, Cheng THT, Wong J, Wong VWS, Ng SSM, Ma BBY, Leung TY, Chan SL, Mok TSK, Lai PBS, Chan HLY, Sun H, Chan KCA, Chiu RWK, Lo YMD.

Genome Res. 2019 Mar;29(3):418-427. doi: 10.1101/gr.242719.118.


Cohesin occupancy and composition at enhancers and promoters are linked to DNA replication origin proximity in Drosophila.

Pherson M, Misulovin Z, Gause M, Dorsett D.

Genome Res. 2019 Feb 22. doi: 10.1101/gr.243832.118. [Epub ahead of print]


TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells.

Rasmussen KD, Berest I, Keβler S, Nishimura K, Simón-Carrasco L, Vassiliou GS, Pedersen MT, Christensen J, Zaugg JB, Helin K.

Genome Res. 2019 Feb 22. doi: 10.1101/gr.239277.118. [Epub ahead of print]


Bayesian-based noninvasive prenatal diagnosis of single-gene disorders.

Rabinowitz T, Polsky A, Golan D, Danilevsky A, Shapira G, Raff C, Basel-Salmon L, Matar RT, Shomron N.

Genome Res. 2019 Mar;29(3):428-438. doi: 10.1101/gr.235796.118. Epub 2019 Feb 20.


New guidelines for DNA methylome studies regarding 5-hydroxymethylcytosine for understanding transcriptional regulation.

Li L, Gao Y, Wu Q, Cheng ASL, Yip KY.

Genome Res. 2019 Feb 19. doi: 10.1101/gr.240036.118. [Epub ahead of print]


Improved discovery of genetic interactions using CRISPRiSeq across multiple environments.

Jaffe M, Dziulko A, Smith JD, St Onge RP, Levy SF, Sherlock G.

Genome Res. 2019 Feb 19. doi: 10.1101/gr.246603.118. [Epub ahead of print]


Ribosomal DNA harbors an evolutionarily conserved clock of biological aging.

Wang M, Lemos B.

Genome Res. 2019 Mar;29(3):325-333. doi: 10.1101/gr.241745.118. Epub 2019 Feb 14.


Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development.

Pawlak M, Kedzierska KZ, Migdal M, Nahia KA, Ramilowski JA, Bugajski L, Hashimoto K, Marconi A, Piwocka K, Carninci P, Winata CL.

Genome Res. 2019 Mar;29(3):506-519. doi: 10.1101/gr.244491.118. Epub 2019 Feb 13.


Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks.

Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM.

Genome Res. 2019 Feb 13. doi: 10.1101/gr.239863.118. [Epub ahead of print]


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