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Items: 1 to 20 of 390

1.

Linear regression models predicting strength of transcriptional activity of promoters.

Yada T, Yoshida K, Morita M, Taniguchi T, Irie T, Suzuki Y.

Genome Inform. 2011;25(1):53-60.

2.

Sign: large-scale gene network estimation environment for high performance computing.

Tamada Y, Shimamura T, Yamaguchi R, Imoto S, Nagasaki M, Miyano S.

Genome Inform. 2011;25(1):40-52.

3.

Docking-calculation-based method for predicting protein-RNA interactions.

Ohue M, Matsuzaki Y, Akiyama Y.

Genome Inform. 2011;25(1):25-39.

4.

Mechanism of cell cycle disruption by multiple p53 pulses.

Iwamoto K, Hamada H, Okamoto M.

Genome Inform. 2011;25(1):12-24.

5.

Database for crude drugs and Kampo medicine.

Arita M, Yoshimoto M, Suwa K, Hirai A, Kanaya S, Shibahara N, Tanaka K.

Genome Inform. 2011;25(1):1-11.

6.

A dynamic programming algorithm to predict synthesis processes of tree-structured compounds with graph grammar.

Zhao Y, Tamura T, Hayashida M, Akutsu T.

Genome Inform. 2010;24:218-29.

PMID:
22081602
7.
8.

Integer programming-based method for completing signaling pathways and its application to analysis of colorectal cancer.

Tamura T, Yamanishi Y, Tanabe M, Goto S, Kanehisa M, Horimoto K, Akutsu T.

Genome Inform. 2010;24:193-203.

PMID:
22081600
10.

Collocation-based sparse estimation for constructing dynamic gene networks.

Shimamura T, Imoto S, Nagasaki M, Yamauchi M, Yamaguchi R, Fujita A, Tamada Y, Gotoh N, Miyano S.

Genome Inform. 2010;24:164-78.

PMID:
22081598
11.

Analyzing gene coexpression data by an evolutionary model.

Schütte M, Mutwil M, Persson S, Ebenhöh O.

Genome Inform. 2010;24:154-63.

12.

Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer.

Reddy A, Huang CC, Liu H, Delisi C, Nevalainen MT, Szalma S, Bhanot G.

Genome Inform. 2010;24:139-53.

13.

Genome-wide analysis of plant UGT family based on sequence and substrate information.

Nishimura Y, Tokimatsu T, Kotera M, Goto S, Kanehisa M.

Genome Inform. 2010;24:127-38.

14.

Phylogenetic analysis of lipid mediator GPCRs.

Mizutani S, Tanaka M, Wheelock CE, Kanehisa M, Goto S.

Genome Inform. 2010;24:116-26.

PMID:
22081594
15.

Comprehensive genomic analysis of sulfur-relay pathway genes.

Kotera M, Bayashi T, Hattori M, Tokimatsu T, Goto S, Mihara H, Kanehisa M.

Genome Inform. 2010;24:104-15.

16.

Fluxviz - Cytoscape plug-in for visualization of flux distributions in networks.

König M, Holzhütter HG.

Genome Inform. 2010;24:96-103.

PMID:
22081592
17.

Gene regulatory network clustering for graph layout based on microarray gene expression data.

Kojima K, Imoto S, Nagasaki M, Miyano S.

Genome Inform. 2010;24:84-95.

18.

On the performance of methods for finding a switching mechanism in gene expression.

Kayano M, Takigawa I, Shiga M, Tsuda K, Mamitsuka H.

Genome Inform. 2010;24:69-83.

PMID:
22081590
19.

Comparison of gene expression profiles produced by CAGE, illumina microarray and real time RT-PCR.

Fujita A, Nagasaki M, Imoto S, Saito A, Ikeda E, Shimamura T, Yamaguchi R, Hayashizaki Y, Miyano S.

Genome Inform. 2010;24:56-68.

20.

A systems biology approach: modelling of Aquaporin-2 trafficking.

Fröhlich M, Deen PM, Klipp E.

Genome Inform. 2010;24:42-55.

PMID:
22081588

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