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Items: 1 to 20 of 31


Genome-level comparisons provide insight into the phylogeny and metabolic diversity of species within the genus Lactococcus.

Yu J, Song Y, Ren Y, Qing Y, Liu W, Sun Z.

BMC Microbiol. 2017 Nov 3;17(1):213. doi: 10.1186/s12866-017-1120-5.


Advantages of phylogenetic distance based constrained ordination analyses for the examination of microbial communities.

Shankar V, Agans R, Paliy O.

Sci Rep. 2017 Jul 25;7(1):6481. doi: 10.1038/s41598-017-06693-z.


Effects of Secondary Plant Metabolites on Microbial Populations: Changes in Community Structure and Metabolic Activity in Contaminated Environments.

Musilova L, Ridl J, Polivkova M, Macek T, Uhlik O.

Int J Mol Sci. 2016 Jul 29;17(8). pii: E1205. doi: 10.3390/ijms17081205. Review.


Variability of rRNA Operon Copy Number and Growth Rate Dynamics of Bacillus Isolated from an Extremely Oligotrophic Aquatic Ecosystem.

Valdivia-Anistro JA, Eguiarte-Fruns LE, Delgado-Sapién G, Márquez-Zacarías P, Gasca-Pineda J, Learned J, Elser JJ, Olmedo-Alvarez G, Souza V.

Front Microbiol. 2016 Jan 5;6:1486. doi: 10.3389/fmicb.2015.01486. eCollection 2015.


Perspective for Aquaponic Systems: "Omic" Technologies for Microbial Community Analysis.

Munguia-Fragozo P, Alatorre-Jacome O, Rico-Garcia E, Torres-Pacheco I, Cruz-Hernandez A, Ocampo-Velazquez RV, Garcia-Trejo JF, Guevara-Gonzalez RG.

Biomed Res Int. 2015;2015:480386. doi: 10.1155/2015/480386. Epub 2015 Oct 5. Review.


Under-detection of endospore-forming Firmicutes in metagenomic data.

Filippidou S, Junier T, Wunderlin T, Lo CC, Li PE, Chain PS, Junier P.

Comput Struct Biotechnol J. 2015 Apr 25;13:299-306. doi: 10.1016/j.csbj.2015.04.002. eCollection 2015.


Use of a high-throughput in vitro microfluidic system to develop oral multi-species biofilms.

Samarian DS, Jakubovics NS, Luo TL, Rickard AH.

J Vis Exp. 2014 Dec 1;(94). doi: 10.3791/52467.


Evolution of a genome-encoded bias in amino acid biosynthetic pathways is a potential indicator of amino acid dynamics in the environment.

Fasani RA, Savageau MA.

Mol Biol Evol. 2014 Nov;31(11):2865-78. doi: 10.1093/molbev/msu225. Epub 2014 Aug 12.


Massive expansion of Ubiquitination-related gene families within the Chlamydiae.

Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T, Subtil A, Horn M.

Mol Biol Evol. 2014 Nov;31(11):2890-904. doi: 10.1093/molbev/msu227. Epub 2014 Jul 28.


Comparative genomics of the bacterial genus Streptococcus illuminates evolutionary implications of species groups.

Gao XY, Zhi XY, Li HW, Klenk HP, Li WJ.

PLoS One. 2014 Jun 30;9(6):e101229. doi: 10.1371/journal.pone.0101229. eCollection 2014.


Marine microbial metagenomics: from individual to the environment.

Tseng CH, Tang SL.

Int J Mol Sci. 2014 May 19;15(5):8878-92. doi: 10.3390/ijms15058878. Review.


Recent advances and future perspectives in microbial phototrophy in antarctic sea ice.

Koh EY, Martin AR, McMinn A, Ryan KG.

Biology (Basel). 2012 Oct 22;1(3):542-56. doi: 10.3390/biology1030542.


Cryptosporidium,Giardia, Cryptococcus, Pneumocystis genetic variability: cryptic biological species or clonal near-clades?

Tibayrenc M, Ayala FJ.

PLoS Pathog. 2014 Apr 10;10(4):e1003908. doi: 10.1371/journal.ppat.1003908. eCollection 2014 Apr. Review.


Genetic diversity and population structure of rice pathogen Ustilaginoidea virens in China.

Sun X, Kang S, Zhang Y, Tan X, Yu Y, He H, Zhang X, Liu Y, Wang S, Sun W, Cai L, Li S.

PLoS One. 2013 Sep 30;8(9):e76879. doi: 10.1371/journal.pone.0076879. eCollection 2013. Erratum in: PLoS One. 2013;8(12). doi:10.1371/annotation/13aec20c-1d9d-4c18-a9a3-a8767987b9b8.


Novel cultivation-based approach to understanding the miscellaneous crenarchaeotic group (MCG) archaea from sedimentary ecosystems.

Gagen EJ, Huber H, Meador T, Hinrichs KU, Thomm M.

Appl Environ Microbiol. 2013 Oct;79(20):6400-6. doi: 10.1128/AEM.02153-13. Epub 2013 Aug 9.


Evolutionary biology for the 21st century.

Losos JB, Arnold SJ, Bejerano G, Brodie ED 3rd, Hibbett D, Hoekstra HE, Mindell DP, Monteiro A, Moritz C, Orr HA, Petrov DA, Renner SS, Ricklefs RE, Soltis PS, Turner TL.

PLoS Biol. 2013;11(1):e1001466. doi: 10.1371/journal.pbio.1001466. Epub 2013 Jan 8. No abstract available.


Metagenomics in animal gastrointestinal ecosystem: a microbiological and biotechnological perspective.

Singh B, Bhat TK, Kurade NP, Sharma OP.

Indian J Microbiol. 2008 Jun;48(2):216-27. doi: 10.1007/s12088-008-0027-0. Epub 2008 Jun 17.


A biological treasure metagenome: pave a way for big science.

Park SY, Kim GJ.

Indian J Microbiol. 2008 Jun;48(2):163-72. doi: 10.1007/s12088-008-0030-5. Epub 2008 Jul 27.


Parallel-META: efficient metagenomic data analysis based on high-performance computation.

Su X, Xu J, Ning K.

BMC Syst Biol. 2012;6 Suppl 1:S16. doi: 10.1186/1752-0509-6-S1-S16. Epub 2012 Jul 16.

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