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Evidence of highly regulated genes (in-Hubs) in gene networks of Saccharomyces cerevisiae.

Lundström J, Björkegren J, Tegnér J.

Bioinform Biol Insights. 2008 Jul 14;2:307-16.


Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.


Understanding gene essentiality by finely characterizing hubs in the yeast protein interaction network.

Pang K, Sheng H, Ma X.

Biochem Biophys Res Commun. 2010 Oct 8;401(1):112-6. doi: 10.1016/j.bbrc.2010.09.021. Epub 2010 Sep 15.


Robust gene network analysis reveals alteration of the STAT5a network as a hallmark of prostate cancer.

Reddy A, Huang CC, Liu H, Delisi C, Nevalainen MT, Szalma S, Bhanot G.

Genome Inform. 2010;24:139-53.


Genome-wide system analysis reveals stable yet flexible network dynamics in yeast.

Gustafsson M, Hörnquist M, Björkegren J, Tegnér J.

IET Syst Biol. 2009 Jul;3(4):219-28. doi: 10.1049/iet-syb.2008.0112.


Protein evolution in yeast transcription factor subnetworks.

Wang Y, Franzosa EA, Zhang XS, Xia Y.

Nucleic Acids Res. 2010 Oct;38(18):5959-69. doi: 10.1093/nar/gkq353. Epub 2010 May 13.


Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella enterica serovar Typhimurium.

Rosenkrantz JT, Aarts H, Abee T, Rolfe MD, Knudsen GM, Nielsen MB, Thomsen LE, Zwietering MH, Olsen JE, Pin C.

BMC Microbiol. 2013 Dec 17;13:294. doi: 10.1186/1471-2180-13-294.


Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.

Venancio TM, Balaji S, Geetha S, Aravind L.

Mol Biosyst. 2010 Aug;6(8):1475-91. doi: 10.1039/c002567b. Epub 2010 Jun 2.


Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle.

Bushel PR, Heard NA, Gutman R, Liu L, Peddada SD, Pyne S.

BMC Syst Biol. 2009 Sep 16;3:93. doi: 10.1186/1752-0509-3-93.


Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks.

Muetze T, Goenawan IH, Wiencko HL, Bernal-Llinares M, Bryan K, Lynn DJ.

Version 2. F1000Res. 2016 Jul 19 [revised 2016 Jan 1];5:1745. eCollection 2016.


Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.

Padi M, Quackenbush J.

BMC Syst Biol. 2015 Nov 14;9:80. doi: 10.1186/s12918-015-0228-1.


Identification and Classification of Hubs in microRNA Target Gene Networks in Human Neural Stem/Progenitor Cells following Japanese Encephalitis Virus Infection.

Mukherjee S, Akbar I, Bhagat R, Hazra B, Bhattacharyya A, Seth P, Roy D, Basu A.

mSphere. 2019 Oct 2;4(5). pii: e00588-19. doi: 10.1128/mSphere.00588-19.


The properties of hub proteins in a yeast-aggregated cell cycle network and its phase sub-networks.

Wu X, Guo J, Zhang DY, Lin K.

Proteomics. 2009 Oct;9(20):4812-24. doi: 10.1002/pmic.200900053.


Correlation of genomic features with dynamic modularity in the yeast interactome: a view from the structural perspective.

Wang H, Zheng H.

IEEE Trans Nanobioscience. 2012 Sep;11(3):244-50. doi: 10.1109/TNB.2012.2212720.


Dynamic hubs show competitive and static hubs non-competitive regulation of their interaction partners.

Goel A, Wilkins MR.

PLoS One. 2012;7(10):e48209. doi: 10.1371/journal.pone.0048209. Epub 2012 Oct 31.


Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.


Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis.

Chen SF, Juang YL, Chou WK, Lai JM, Huang CY, Kao CY, Wang FS.

BMC Syst Biol. 2009 Nov 27;3:110. doi: 10.1186/1752-0509-3-110.

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