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Items: 1 to 20 of 450

1.

LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.

Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S5. Review.

2.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

3.

Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics.

Smith A, Cheung K, Krauthammer M, Schultz M, Gerstein M.

Bioinformatics. 2007 Nov 15;23(22):3073-9.

PMID:
17923450
4.

Towards Semantic e-Science for Traditional Chinese Medicine.

Chen H, Mao Y, Zheng X, Cui M, Feng Y, Deng S, Yin A, Zhou C, Tang J, Jiang X, Wu Z.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S6. Review.

5.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
6.

GPSDB: a new database for synonyms expansion of gene and protein names.

Pillet V, Zehnder M, Seewald AK, Veuthey AL, Petrak J.

Bioinformatics. 2005 Apr 15;21(8):1743-4.

PMID:
15613390
7.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

8.

Advancing translational research with the Semantic Web.

Ruttenberg A, Clark T, Bug W, Samwald M, Bodenreider O, Chen H, Doherty D, Forsberg K, Gao Y, Kashyap V, Kinoshita J, Luciano J, Marshall MS, Ogbuji C, Rees J, Stephens S, Wong GT, Wu E, Zaccagnini D, Hongsermeier T, Neumann E, Herman I, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S2. Review.

9.

Scaling the walls of discovery: using semantic metadata for integrative problem solving.

Manning M, Aggarwal A, Gao K, Tucker-Kellogg G.

Brief Bioinform. 2009 Mar;10(2):164-76. doi: 10.1093/bib/bbp007.

PMID:
19304872
10.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20.

11.

yOWL: an ontology-driven knowledge base for yeast biologists.

Villanueva-Rosales N, Dumontier M.

J Biomed Inform. 2008 Oct;41(5):779-89. doi: 10.1016/j.jbi.2008.05.001.

12.

AbMiner: a bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies.

Major SM, Nishizuka S, Morita D, Rowland R, Sunshine M, Shankavaram U, Washburn F, Asin D, Kouros-Mehr H, Kane D, Weinstein JN.

BMC Bioinformatics. 2006 Apr 6;7:192.

13.

Web service access to semantic web ontologies for data annotation.

Franklin JD, Mejino JL, Detwiler LT, Rubin DL, Brinkley JF.

AMIA Annu Symp Proc. 2008 Nov 6:946.

PMID:
18998840
14.

Graph visualization techniques for web clustering engines.

Di Giacomo E, Didimo W, Grilli L, Liotta G.

IEEE Trans Vis Comput Graph. 2007 Mar-Apr;13(2):294-304.

PMID:
17218746
15.

PTGL--a web-based database application for protein topologies.

May P, Barthel S, Koch I.

Bioinformatics. 2004 Nov 22;20(17):3277-9.

PMID:
15217820
16.
17.

A semantic web ontology for small molecules and their biological targets.

Choi J, Davis MJ, Newman AF, Ragan MA.

J Chem Inf Model. 2010 May 24;50(5):732-41. doi: 10.1021/ci900461j.

PMID:
20405959
18.

UniProt archive.

Leinonen R, Diez FG, Binns D, Fleischmann W, Lopez R, Apweiler R.

Bioinformatics. 2004 Nov 22;20(17):3236-7.

PMID:
15044231
19.

Semantic web for integrated network analysis in biomedicine.

Chen H, Ding L, Wu Z, Yu T, Dhanapalan L, Chen JY.

Brief Bioinform. 2009 Mar;10(2):177-92. doi: 10.1093/bib/bbp002.

PMID:
19304873
20.

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