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Items: 1 to 20 of 89

1.

Systems biology of innate immunity.

Tegnér J, Nilsson R, Bajic VB, Björkegren J, Ravasi T.

Cell Immunol. 2006 Dec;244(2):105-9. Epub 2007 Apr 11.

2.

Integrated approaches to uncovering transcription regulatory networks in mammalian cells.

Tan K, Tegner J, Ravasi T.

Genomics. 2008 Mar;91(3):219-31. doi: 10.1016/j.ygeno.2007.11.005. Epub 2008 Jan 8. Review.

3.

Transcriptional regulatory networks in macrophages.

Hume DA, Wells CA, Ravasi T.

Novartis Found Symp. 2007;281:2-18; discussion 18-24, 50-3, 208-9. Review.

PMID:
17534062
4.

Opinion: Interpretation of the complexity of innate immune responses by functional genomics.

Ricciardi-Castagnoli P, Granucci F.

Nat Rev Immunol. 2002 Nov;2(11):881-9. Review.

PMID:
12415311
5.

Systems biology approaches to dissect mammalian innate immunity.

Shapira SD, Hacohen N.

Curr Opin Immunol. 2011 Feb;23(1):71-7. doi: 10.1016/j.coi.2010.10.022. Epub 2010 Nov 24. Review.

6.

Applications of lipopolysaccharide derived from Pantoea agglomerans (IP-PA1) for health care based on macrophage network theory.

Kohchi C, Inagawa H, Nishizawa T, Yamaguchi T, Nagai S, Soma G.

J Biosci Bioeng. 2006 Dec;102(6):485-96. Review.

PMID:
17270712
7.

Strategies to discover regulatory circuits of the mammalian immune system.

Amit I, Regev A, Hacohen N.

Nat Rev Immunol. 2011 Nov 18;11(12):873-80. doi: 10.1038/nri3109. Review.

8.

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

Gilchrist M, Thorsson V, Li B, Rust AG, Korb M, Roach JC, Kennedy K, Hai T, Bolouri H, Aderem A.

Nature. 2006 May 11;441(7090):173-8. Erratum in: Nature. 2008 Feb 21;451(7181):1022. Roach, Jared C [added].

PMID:
16688168
9.

Systems biology of innate immunity.

Zak DE, Aderem A.

Immunol Rev. 2009 Jan;227(1):264-82. doi: 10.1111/j.1600-065X.2008.00721.x. Review.

10.
11.

Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells.

Fu Y, Glaros T, Zhu M, Wang P, Wu Z, Tyson JJ, Li L, Xing J.

PLoS Comput Biol. 2012;8(5):e1002526. doi: 10.1371/journal.pcbi.1002526. Epub 2012 May 17.

12.

Transcriptional analysis of LPS-stimulated activation of trout (Oncorhynchus mykiss) monocyte/macrophage cells in primary culture treated with cortisol.

MacKenzie S, Iliev D, Liarte C, Koskinen H, Planas JV, Goetz FW, Mölsä H, Krasnov A, Tort L.

Mol Immunol. 2006 Mar;43(9):1340-8. Epub 2005 Oct 18.

PMID:
16239032
13.

Functional genomic delineation of TLR-induced transcriptional networks.

Elkon R, Linhart C, Halperin Y, Shiloh Y, Shamir R.

BMC Genomics. 2007 Oct 29;8:394.

14.

Linking transcriptional changes over time in stimulated dendritic cells to identify gene networks activated during the innate immune response.

Patil A, Kumagai Y, Liang KC, Suzuki Y, Nakai K.

PLoS Comput Biol. 2013;9(11):e1003323. doi: 10.1371/journal.pcbi.1003323. Epub 2013 Nov 7.

15.

A systems approach to dissecting immunity and inflammation.

Aderem A, Smith KD.

Semin Immunol. 2004 Feb;16(1):55-67. Review.

PMID:
14751764
16.

Epigenetic contribution to individual variation in response to lipopolysaccharide in bovine dermal fibroblasts.

Green BB, Kerr DE.

Vet Immunol Immunopathol. 2014 Jan 15;157(1-2):49-58. doi: 10.1016/j.vetimm.2013.10.015. Epub 2013 Oct 31.

17.

A network-based analysis of systemic inflammation in humans.

Calvano SE, Xiao W, Richards DR, Felciano RM, Baker HV, Cho RJ, Chen RO, Brownstein BH, Cobb JP, Tschoeke SK, Miller-Graziano C, Moldawer LL, Mindrinos MN, Davis RW, Tompkins RG, Lowry SF; Inflamm and Host Response to Injury Large Scale Collab. Res. Program.

Nature. 2005 Oct 13;437(7061):1032-7. Epub 2005 Aug 31. Erratum in: Nature. 2005 Dec 1;438(7068):696.

PMID:
16136080
18.

Transcriptional network dynamics in macrophage activation.

Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Björkegren J, Katayama S, Reid JF, Sweet MJ, Gariboldi M, Carninci P, Hayashizaki Y, Hume DA, Tegner J, Ravasi T.

Genomics. 2006 Aug;88(2):133-42. Epub 2006 May 12.

19.

Curating the innate immunity interactome.

Lynn DJ, Chan C, Naseer M, Yau M, Lo R, Sribnaia A, Ring G, Que J, Wee K, Winsor GL, Laird MR, Breuer K, Foroushani AK, Brinkman FS, Hancock RE.

BMC Syst Biol. 2010 Aug 20;4:117. doi: 10.1186/1752-0509-4-117.

20.

Macrophages in food allergy: an enigma.

Kumar S, Dwivedi PD, Das M, Tripathi A.

Mol Immunol. 2013 Dec;56(4):612-8. doi: 10.1016/j.molimm.2013.06.009. Epub 2013 Aug 1. Review.

PMID:
23911419

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