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Items: 1 to 20 of 172

1.

Perturbations to uncover gene networks.

Tegnér J, Björkegren J.

Trends Genet. 2007 Jan;23(1):34-41. Epub 2006 Nov 13. Review.

PMID:
17098324
2.

Integrative mining of traditional Chinese medicine literature and MEDLINE for functional gene networks.

Zhou X, Liu B, Wu Z, Feng Y.

Artif Intell Med. 2007 Oct;41(2):87-104. Epub 2007 Sep 5.

PMID:
17804209
3.

Promoting synergistic research and education in genomics and bioinformatics.

Yang JY, Yang MQ, Zhu MM, Arabnia HR, Deng Y.

BMC Genomics. 2008;9 Suppl 1:I1. doi: 10.1186/1471-2164-9-S1-I1. Review.

4.

Extracting biology from high-dimensional biological data.

Quackenbush J.

J Exp Biol. 2007 May;210(Pt 9):1507-17.

5.

MOVE: a multi-level ontology-based visualization and exploration framework for genomic networks.

Bosman DW, Blom EJ, Ogao PJ, Kuipers OP, Roerdink JB.

In Silico Biol. 2007;7(1):35-59.

PMID:
17688427
6.

Computational approaches to gene prediction.

Do JH, Choi DK.

J Microbiol. 2006 Apr;44(2):137-44. Review.

7.

Bridge and brick network motifs: identifying significant building blocks from complex biological systems.

Huang CY, Cheng CY, Sun CT.

Artif Intell Med. 2007 Oct;41(2):117-27. Epub 2007 Sep 7.

PMID:
17825540
8.

Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms.

Kültz D, Fiol D, Valkova N, Gomez-Jimenez S, Chan SY, Lee J.

J Exp Biol. 2007 May;210(Pt 9):1593-601. Review.

10.

Inferring biomolecular interaction networks based on convex optimization.

Han S, Yoon Y, Cho KH.

Comput Biol Chem. 2007 Oct;31(5-6):347-54. Epub 2007 Aug 17.

PMID:
17890159
11.

Approaches to lipid metabolism gene identification and characterization in the postgenomic era.

Reue K, Vergnes L.

J Lipid Res. 2006 Sep;47(9):1891-907. Epub 2006 Jul 11. Review.

12.

Applications of next-generation sequencing technologies in functional genomics.

Morozova O, Marra MA.

Genomics. 2008 Nov;92(5):255-64. doi: 10.1016/j.ygeno.2008.07.001. Epub 2008 Aug 24. Review.

13.

Functional models for large-scale gene regulation networks: realism and fiction.

Lagomarsino MC, Bassetti B, Castellani G, Remondini D.

Mol Biosyst. 2009 Apr;5(4):335-44. doi: 10.1039/b816841p. Epub 2009 Jan 30. Review.

PMID:
19396369
14.

Whole-genome re-sequencing.

Bentley DR.

Curr Opin Genet Dev. 2006 Dec;16(6):545-52. Epub 2006 Oct 18. Review.

PMID:
17055251
15.

Optimal parameter settings for information processing in gene regulatory networks.

Chu DF, Zabet NR, Hone AN.

Biosystems. 2011 May-Jun;104(2-3):99-108. doi: 10.1016/j.biosystems.2011.01.006. Epub 2011 Jan 21.

PMID:
21256918
16.

A hybrid Bayesian network learning method for constructing gene networks.

Wang M, Chen Z, Cloutier S.

Comput Biol Chem. 2007 Oct;31(5-6):361-72. Epub 2007 Aug 19.

PMID:
17889617
17.

A multi-layered approach to protein data integration for diabetes research.

McGarry K, Chambers J, Oatley G.

Artif Intell Med. 2007 Oct;41(2):129-43. Epub 2007 Sep 14.

PMID:
17869073
18.

Reverse engineering cellular networks.

Margolin AA, Wang K, Lim WK, Kustagi M, Nemenman I, Califano A.

Nat Protoc. 2006;1(2):662-71.

PMID:
17406294
19.

Prediction of pairwise gene interaction using threshold logic.

Gowda T, Vrudhula S, Kim S.

Ann N Y Acad Sci. 2009 Mar;1158:276-86. doi: 10.1111/j.1749-6632.2008.03763.x.

PMID:
19348649
20.

Sequence assembly.

Scheibye-Alsing K, Hoffmann S, Frankel A, Jensen P, Stadler PF, Mang Y, Tommerup N, Gilchrist MJ, Nygård AB, Cirera S, Jørgensen CB, Fredholm M, Gorodkin J.

Comput Biol Chem. 2009 Apr;33(2):121-36. doi: 10.1016/j.compbiolchem.2008.11.003. Epub 2008 Dec 6. Review.

PMID:
19152793

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