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Items: 1 to 20 of 73

1.

Transcriptional network dynamics in macrophage activation.

Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Björkegren J, Katayama S, Reid JF, Sweet MJ, Gariboldi M, Carninci P, Hayashizaki Y, Hume DA, Tegner J, Ravasi T.

Genomics. 2006 Aug;88(2):133-42. Epub 2006 May 12.

2.

Transcriptional analysis of LPS-stimulated activation of trout (Oncorhynchus mykiss) monocyte/macrophage cells in primary culture treated with cortisol.

MacKenzie S, Iliev D, Liarte C, Koskinen H, Planas JV, Goetz FW, Mölsä H, Krasnov A, Tort L.

Mol Immunol. 2006 Mar;43(9):1340-8. Epub 2005 Oct 18.

PMID:
16239032
4.

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

Hosseinpour B, Bakhtiarizadeh MR, Khosravi P, Ebrahimie E.

Gene. 2013 Dec 1;531(2):212-9. doi: 10.1016/j.gene.2013.09.011. Epub 2013 Sep 13.

PMID:
24042128
6.

Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4.

Gilchrist M, Thorsson V, Li B, Rust AG, Korb M, Roach JC, Kennedy K, Hai T, Bolouri H, Aderem A.

Nature. 2006 May 11;441(7090):173-8. Erratum in: Nature. 2008 Feb 21;451(7181):1022. Roach, Jared C [added].

PMID:
16688168
7.

JUNB is a key transcriptional modulator of macrophage activation.

Fontana MF, Baccarella A, Pancholi N, Pufall MA, Herbert DR, Kim CC.

J Immunol. 2015 Jan 1;194(1):177-86. doi: 10.4049/jimmunol.1401595. Epub 2014 Dec 3.

9.
10.

Both PU.1 and nuclear factor-kappa B mediate lipopolysaccharide- induced HIV-1 long terminal repeat transcription in macrophages.

Lodie TA, Reiner M, Coniglio S, Viglianti G, Fenton MJ.

J Immunol. 1998 Jul 1;161(1):268-76.

11.

Rapid temporal dynamics of transcription, protein synthesis, and secretion during macrophage activation.

Eichelbaum K, Krijgsveld J.

Mol Cell Proteomics. 2014 Mar;13(3):792-810. doi: 10.1074/mcp.M113.030916. Epub 2014 Jan 6.

12.

LPS regulates a set of genes in primary murine macrophages by antagonising CSF-1 action.

Sester DP, Trieu A, Brion K, Schroder K, Ravasi T, Robinson JA, McDonald RC, Ripoll V, Wells CA, Suzuki H, Hayashizaki Y, Stacey KJ, Hume DA, Sweet MJ.

Immunobiology. 2005;210(2-4):97-107.

PMID:
16164016
13.

Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics.

Ramsey SA, Klemm SL, Zak DE, Kennedy KA, Thorsson V, Li B, Gilchrist M, Gold ES, Johnson CD, Litvak V, Navarro G, Roach JC, Rosenberger CM, Rust AG, Yudkovsky N, Aderem A, Shmulevich I.

PLoS Comput Biol. 2008 Mar 21;4(3):e1000021. doi: 10.1371/journal.pcbi.1000021. Erratum in: PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/1c55be5f-ecd7-49be-91c1-91881be60297. PLoS Comput Biol. 2008 Mar;4(3). doi: 10.1371/annotation/e14ad837-e5ff-4bd5-a5f2-f32e784d75a2.

14.

Novel regulators of the systemic response to lipopolysaccharide.

Yang IV, Alper S, Lackford B, Rutledge H, Warg LA, Burch LH, Schwartz DA.

Am J Respir Cell Mol Biol. 2011 Aug;45(2):393-402. doi: 10.1165/rcmb.2010-0342OC. Epub 2010 Dec 3.

16.

Network inference algorithms elucidate Nrf2 regulation of mouse lung oxidative stress.

Taylor RC, Acquaah-Mensah G, Singhal M, Malhotra D, Biswal S.

PLoS Comput Biol. 2008 Aug 29;4(8):e1000166. doi: 10.1371/journal.pcbi.1000166.

17.

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

Vitezic M, Lassmann T, Forrest AR, Suzuki M, Tomaru Y, Kawai J, Carninci P, Suzuki H, Hayashizaki Y, Daub CO.

Nucleic Acids Res. 2010 Dec;38(22):8141-8. doi: 10.1093/nar/gkq729. Epub 2010 Aug 19.

18.

Dynamics of hepatic gene expression profile in a rat cecal ligation and puncture model.

Yang Q, Mattick JS, Orman MA, Nguyen TT, Ierapetritou MG, Berthiaume F, Androulakis IP.

J Surg Res. 2012 Aug;176(2):583-600. doi: 10.1016/j.jss.2011.11.1031. Epub 2011 Dec 15.

19.

Transcription of Tnfaip3 is regulated by NF-κB and p38 via C/EBPβ in activated macrophages.

Lai TY, Wu SD, Tsai MH, Chuang EY, Chuang LL, Hsu LC, Lai LC.

PLoS One. 2013 Sep 2;8(9):e73153. doi: 10.1371/journal.pone.0073153. eCollection 2013.

20.

Adaptively inferring human transcriptional subnetworks.

Das D, Nahlé Z, Zhang MQ.

Mol Syst Biol. 2006;2:2006.0029. Epub 2006 Jun 6.

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