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Items: 1 to 20 of 65

1.
2.

Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.

Edelman E, Porrello A, Guinney J, Balakumaran B, Bild A, Febbo PG, Mukherjee S.

Bioinformatics. 2006 Jul 15;22(14):e108-16.

PMID:
16873460
3.

Discovery of uncharacterized cellular systems by genome-wide analysis of functional linkages.

Date SV, Marcotte EM.

Nat Biotechnol. 2003 Sep;21(9):1055-62. Epub 2003 Aug 17.

PMID:
12923548
4.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

5.

Safety and nutritional assessment of GM plants and derived food and feed: the role of animal feeding trials.

EFSA GMO Panel Working Group on Animal Feeding Trials.

Food Chem Toxicol. 2008 Mar;46 Suppl 1:S2-70. doi: 10.1016/j.fct.2008.02.008. Epub 2008 Feb 13. Review.

PMID:
18328408
8.

Systematic discovery of functional modules and context-specific functional annotation of human genome.

Huang Y, Li H, Hu H, Yan X, Waterman MS, Huang H, Zhou XJ.

Bioinformatics. 2007 Jul 1;23(13):i222-9.

PMID:
17646300
9.
10.

[Development of antituberculous drugs: current status and future prospects].

Tomioka H, Namba K.

Kekkaku. 2006 Dec;81(12):753-74. Review. Japanese.

PMID:
17240921
11.

Learning regulatory programs that accurately predict differential expression with MEDUSA.

Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.

Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.

PMID:
17934055
12.

Ensemble learning of genetic networks from time-series expression data.

Nam D, Yoon SH, Kim JF.

Bioinformatics. 2007 Dec 1;23(23):3225-31. Epub 2007 Oct 31.

PMID:
17977884
13.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Epub 2008 Dec 27. Review.

PMID:
19150482
14.

Comparison of reverse-engineering methods using an in silico network.

Camacho D, Vera Licona P, Mendes P, Laubenbacher R.

Ann N Y Acad Sci. 2007 Dec;1115:73-89. Epub 2007 Oct 9. Review.

PMID:
17925358
15.

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues.

Aouacheria A, Navratil V, Barthelaix A, Mouchiroud D, Gautier C.

BMC Genomics. 2006 Apr 26;7:94.

16.
17.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

18.

Inferring pairwise regulatory relationships from multiple time series datasets.

Shi Y, Mitchell T, Bar-Joseph Z.

Bioinformatics. 2007 Mar 15;23(6):755-63. Epub 2007 Jan 19.

PMID:
17237067
19.

Prediction of human disease genes by human-mouse conserved coexpression analysis.

Ala U, Piro RM, Grassi E, Damasco C, Silengo L, Oti M, Provero P, Di Cunto F.

PLoS Comput Biol. 2008 Mar 28;4(3):e1000043. doi: 10.1371/journal.pcbi.1000043.

20.

Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method.

Fujita A, Sato JR, Garay-Malpartida HM, Morettin PA, Sogayar MC, Ferreira CE.

Bioinformatics. 2007 Jul 1;23(13):1623-30. Epub 2007 Apr 26.

PMID:
17463021

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