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Items: 21

1.

Quantitative Proteomics Based on Optimized Data-Independent Acquisition in Plasma Analysis.

Nigjeh EN, Chen R, Brand RE, Petersen GM, Chari ST, von Haller PD, Eng JK, Feng Z, Yan Q, Brentnall TA, Pan S.

J Proteome Res. 2017 Feb 3;16(2):665-676. doi: 10.1021/acs.jproteome.6b00727. Epub 2017 Jan 3.

2.

Parallel reaction monitoring (PRM) and selected reaction monitoring (SRM) exhibit comparable linearity, dynamic range and precision for targeted quantitative HDL proteomics.

Ronsein GE, Pamir N, von Haller PD, Kim DS, Oda MN, Jarvik GP, Vaisar T, Heinecke JW.

J Proteomics. 2015 Jan 15;113:388-99. doi: 10.1016/j.jprot.2014.10.017. Epub 2014 Oct 31.

3.

Protein kinase PKN1 represses Wnt/β-catenin signaling in human melanoma cells.

James RG, Bosch KA, Kulikauskas RM, Yang PT, Robin NC, Toroni RA, Biechele TL, Berndt JD, von Haller PD, Eng JK, Wolf-Yadlin A, Chien AJ, Moon RT.

J Biol Chem. 2013 Nov 29;288(48):34658-70. doi: 10.1074/jbc.M113.500314. Epub 2013 Oct 10.

4.

Global analysis of condition-specific subcellular protein distribution and abundance.

Jung S, Smith JJ, von Haller PD, Dilworth DJ, Sitko KA, Miller LR, Saleem RA, Goodlett DR, Aitchison JD.

Mol Cell Proteomics. 2013 May;12(5):1421-35. doi: 10.1074/mcp.O112.019166. Epub 2013 Jan 24.

5.

Sites of ubiquitin attachment in Saccharomyces cerevisiae.

Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.

Proteomics. 2012 Jan;12(2):236-40. doi: 10.1002/pmic.201100166. Epub 2011 Dec 20.

6.

Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses.

Chu LJ, Yang H, Shih P, Kao Y, Tsai YS, Chen J, Huang G, Weng RR, Ting YS, Fang X, von Haller PD, Goodlett DR, Ng WV.

J Proteome Res. 2011 Jul 1;10(7):3261-73. doi: 10.1021/pr200290x. Epub 2011 Jun 14.

7.

New structural proteins of Halobacterium salinarum gas vesicle revealed by comparative proteomics analysis.

Chu LJ, Chen MC, Setter J, Tsai YS, Yang H, Fang X, Ting YS, Shaffer SA, Taylor GK, von Haller PD, Goodlett DR, Ng WV.

J Proteome Res. 2011 Mar 4;10(3):1170-8. doi: 10.1021/pr1009383. Epub 2011 Jan 25.

PMID:
21158390
8.

Precursor charge state prediction for electron transfer dissociation tandem mass spectra.

Sharma V, Eng JK, Feldman S, von Haller PD, MacCoss MJ, Noble WS.

J Proteome Res. 2010 Oct 1;9(10):5438-44. doi: 10.1021/pr1006685.

9.

CD90/THY1 is overexpressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker.

True LD, Zhang H, Ye M, Huang CY, Nelson PS, von Haller PD, Tjoelker LW, Kim JS, Qian WJ, Smith RD, Ellis WJ, Liebeskind ES, Liu AY.

Mod Pathol. 2010 Oct;23(10):1346-56. doi: 10.1038/modpathol.2010.122. Epub 2010 Jun 18.

10.

Estimating false discovery rates for peptide and protein identification using randomized databases.

Hather G, Higdon R, Bauman A, von Haller PD, Kolker E.

Proteomics. 2010 Jun;10(12):2369-76. doi: 10.1002/pmic.200900619.

PMID:
20391536
11.

A photocleavable and mass spectrometry identifiable cross-linker for protein interaction studies.

Yang L, Tang X, Weisbrod CR, Munske GR, Eng JK, von Haller PD, Kaiser NK, Bruce JE.

Anal Chem. 2010 May 1;82(9):3556-66. doi: 10.1021/ac902615g.

12.

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets.

Deutsch EW, Shteynberg D, Lam H, Sun Z, Eng JK, Carapito C, von Haller PD, Tasman N, Mendoza L, Farrah T, Aebersold R.

Proteomics. 2010 Mar;10(6):1190-5. doi: 10.1002/pmic.200900567.

13.

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

Panchaud A, Scherl A, Shaffer SA, von Haller PD, Kulasekara HD, Miller SI, Goodlett DR.

Anal Chem. 2009 Aug 1;81(15):6481-8. doi: 10.1021/ac900888s.

14.

Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures.

Hoopmann MR, Merrihew GE, von Haller PD, MacCoss MJ.

J Proteome Res. 2009 Apr;8(4):1870-5. doi: 10.1021/pr800828p.

15.

New regulators of Wnt/beta-catenin signaling revealed by integrative molecular screening.

Major MB, Roberts BS, Berndt JD, Marine S, Anastas J, Chung N, Ferrer M, Yi X, Stoick-Cooper CL, von Haller PD, Kategaya L, Chien A, Angers S, MacCoss M, Cleary MA, Arthur WT, Moon RT.

Sci Signal. 2008 Nov 11;1(45):ra12. doi: 10.1126/scisignal.2000037.

16.

Lipid raft proteins and their identification in T lymphocytes.

Wollscheid B, von Haller PD, Yi E, Donohoe S, Vaughn K, Keller A, Nesvizhskii AI, Eng J, Li XJ, Goodlett DR, Aebersold R, Watts JD.

Subcell Biochem. 2004;37:121-52. Review.

PMID:
15376619
19.

Phosphorylation of the pro-apoptotic protein Bim in lymphocytes is associated with protection from apoptosis.

Seward RJ, von Haller PD, Aebersold R, Huber BT.

Mol Immunol. 2003 Jun;39(16):983-93.

PMID:
12749905
20.

The two-domain NK1 fragment of plasminogen: folding, ligand binding, and thermal stability profile.

Douglas JT, von Haller PD, Gehrmann M, Llinás M, Schaller J.

Biochemistry. 2002 Mar 12;41(10):3302-10.

PMID:
11876638
21.

Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains.

von Haller PD, Donohoe S, Goodlett DR, Aebersold R, Watts JD.

Proteomics. 2001 Aug;1(8):1010-21.

PMID:
11683502

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