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Items: 1 to 20 of 27

1.

Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach.

Kumar K, Srinivasan P, Nold MJ, Moch JK, Reiter K, Sturdevant D, Otto TD, Squires RB, Herrera R, Nagarajan V, Rayner JC, Porcella SF, Geromanos SJ, Haynes JD, Narum DL.

Sci Rep. 2017 Dec 7;7(1):17146. doi: 10.1038/s41598-017-17505-9.

2.

A Plasmodium yoelii HECT-like E3 ubiquitin ligase regulates parasite growth and virulence.

Nair SC, Xu R, Pattaradilokrat S, Wu J, Qi Y, Zilversmit M, Ganesan S, Nagarajan V, Eastman RT, Orandle MS, Tan JC, Myers TG, Liu S, Long CA, Li J, Su XZ.

Nat Commun. 2017 Aug 9;8(1):223. doi: 10.1038/s41467-017-00267-3.

3.

Ethanol-induced stress response of Staphylococcus aureus.

Pando JM, Pfeltz RF, Cuaron JA, Nagarajan V, Mishra MN, Torres NJ, Elasri MO, Wilkinson BJ, Gustafson JE.

Can J Microbiol. 2017 Sep;63(9):745-757. doi: 10.1139/cjm-2017-0221. Epub 2017 May 18.

PMID:
28521110
4.

MetaNetVar: Pipeline for applying network analysis tools for genomic variants analysis.

Moyer E, Hagenauer M, Lesko M, Francis F, Rodriguez O, Nagarajan V, Huser V, Busby B.

F1000Res. 2016 Apr 13;5:674. doi: 10.12688/f1000research.8288.1. eCollection 2016.

5.

Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions.

Pugacheva EM, Rivero-Hinojosa S, Espinoza CA, Méndez-Catalá CF, Kang S, Suzuki T, Kosaka-Suzuki N, Robinson S, Nagarajan V, Ye Z, Boukaba A, Rasko JE, Strunnikov AV, Loukinov D, Ren B, Lobanenkov VV.

Genome Biol. 2015 Aug 14;16:161. doi: 10.1186/s13059-015-0736-8.

6.

PLZF regulates CCR6 and is critical for the acquisition and maintenance of the Th17 phenotype in human cells.

Singh SP, Zhang HH, Tsang H, Gardina PJ, Myers TG, Nagarajan V, Lee CH, Farber JM.

J Immunol. 2015 May 1;194(9):4350-61. doi: 10.4049/jimmunol.1401093. Epub 2015 Apr 1.

7.

SATRAT: Staphylococcus aureus transcript regulatory network analysis tool.

Gopal T, Nagarajan V, Elasri MO.

PeerJ. 2015 Jan 6;3:e717. doi: 10.7717/peerj.717. eCollection 2015.

8.

Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses.

Golosova O, Henderson R, Vaskin Y, Gabrielian A, Grekhov G, Nagarajan V, Oler AJ, Quiñones M, Hurt D, Fursov M, Huyen Y.

PeerJ. 2014 Nov 4;2:e644. doi: 10.7717/peerj.644. eCollection 2014.

9.

Nucleotide excision repair/transcription gene defects in the fetus and impaired TFIIH-mediated function in transcription in placenta leading to preeclampsia.

Moslehi R, Ambroggio X, Nagarajan V, Kumar A, Dzutsev A.

BMC Genomics. 2014 May 15;15:373. doi: 10.1186/1471-2164-15-373.

10.

miR-155 activates cytokine gene expression in Th17 cells by regulating the DNA-binding protein Jarid2 to relieve polycomb-mediated repression.

Escobar TM, Kanellopoulou C, Kugler DG, Kilaru G, Nguyen CK, Nagarajan V, Bhairavabhotla RK, Northrup D, Zahr R, Burr P, Liu X, Zhao K, Sher A, Jankovic D, Zhu J, Muljo SA.

Immunity. 2014 Jun 19;40(6):865-79. doi: 10.1016/j.immuni.2014.03.014. Epub 2014 May 22.

11.

Genome-wide SNP analysis of the Systemic Capillary Leak Syndrome (Clarkson disease).

Xie Z, Nagarajan V, Sturdevant DE, Iwaki S, Chan E, Wisch L, Young M, Nelson CM, Porcella SF, Druey KM.

Rare Dis. 2013 Dec 12;1(1). pii: e27445.

12.

Genome-wide polymorphisms and development of a microarray platform to detect genetic variations in Plasmodium yoelii.

Nair SC, Pattaradilokrat S, Zilversmit MM, Dommer J, Nagarajan V, Stephens MT, Xiao W, Tan JC, Su XZ.

Mol Biochem Parasitol. 2014 Mar-Apr;194(1-2):9-15. doi: 10.1016/j.molbiopara.2014.03.006. Epub 2014 Mar 29.

13.

Development of genetic system to inactivate a Borrelia turicatae surface protein selectively produced within the salivary glands of the arthropod vector.

Lopez JE, Wilder HK, Hargrove R, Brooks CP, Peterson KE, Beare PA, Sturdevant DE, Nagarajan V, Raffel SJ, Schwan TG.

PLoS Negl Trop Dis. 2013 Oct 31;7(10):e2514. doi: 10.1371/journal.pntd.0002514. eCollection 2013.

14.

Tea tree oil-induced transcriptional alterations in Staphylococcus aureus.

Cuaron JA, Dulal S, Song Y, Singh AK, Montelongo CE, Yu W, Nagarajan V, Jayaswal RK, Wilkinson BJ, Gustafson JE.

Phytother Res. 2013 Mar;27(3):390-6. doi: 10.1002/ptr.4738. Epub 2012 May 23.

15.

The fat body transcriptomes of the yellow fever mosquito Aedes aegypti, pre- and post- blood meal.

Price DP, Nagarajan V, Churbanov A, Houde P, Milligan B, Drake LL, Gustafson JE, Hansen IA.

PLoS One. 2011;6(7):e22573. doi: 10.1371/journal.pone.0022573. Epub 2011 Jul 27.

16.

Alterations in the transcriptome and antibiotic susceptibility of Staphylococcus aureus grown in the presence of diclofenac.

Riordan JT, Dupre JM, Cantore-Matyi SA, Kumar-Singh A, Song Y, Zaman S, Horan S, Helal NS, Nagarajan V, Elasri MO, Wilkinson BJ, Gustafson JE.

Ann Clin Microbiol Antimicrob. 2011 Jul 21;10:30. doi: 10.1186/1476-0711-10-30.

17.

NsaRS is a cell-envelope-stress-sensing two-component system of Staphylococcus aureus.

Kolar SL, Nagarajan V, Oszmiana A, Rivera FE, Miller HK, Davenport JE, Riordan JT, Potempa J, Barber DS, Koziel J, Elasri MO, Shaw LN.

Microbiology. 2011 Aug;157(Pt 8):2206-19. doi: 10.1099/mic.0.049692-0. Epub 2011 May 12.

18.

A novel specificity protein 1 (SP1)-like gene regulating protein kinase C-1 (Pkc1)-dependent cell wall integrity and virulence factors in Cryptococcus neoformans.

Adler A, Park YD, Larsen P, Nagarajan V, Wollenberg K, Qiu J, Myers TG, Williamson PR.

J Biol Chem. 2011 Jun 10;286(23):20977-90. doi: 10.1074/jbc.M111.230268. Epub 2011 Apr 12.

19.

High recombination rates and hotspots in a Plasmodium falciparum genetic cross.

Jiang H, Li N, Gopalan V, Zilversmit MM, Varma S, Nagarajan V, Li J, Mu J, Hayton K, Henschen B, Yi M, Stephens R, McVean G, Awadalla P, Wellems TE, Su XZ.

Genome Biol. 2011;12(4):R33. doi: 10.1186/gb-2011-12-4-r33. Epub 2011 Apr 4.

20.

A novel surface antigen of relapsing fever spirochetes can discriminate between relapsing fever and Lyme borreliosis.

Lopez JE, Schrumpf ME, Nagarajan V, Raffel SJ, McCoy BN, Schwan TG.

Clin Vaccine Immunol. 2010 Apr;17(4):564-71. doi: 10.1128/CVI.00518-09. Epub 2010 Feb 10.

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