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Items: 16

1.

Erratum: Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. Corrigendum.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2019 Apr 9;6(Pt 3):500. doi: 10.1107/S2052252519004317. eCollection 2019 May 1.

2.

Electrospray sample injection for single-particle imaging with x-ray lasers.

Bielecki J, Hantke MF, Daurer BJ, Reddy HKN, Hasse D, Larsson DSD, Gunn LH, Svenda M, Munke A, Sellberg JA, Flueckiger L, Pietrini A, Nettelblad C, Lundholm I, Carlsson G, Okamoto K, Timneanu N, Westphal D, Kulyk O, Higashiura A, van der Schot G, Loh ND, Wysong TE, Bostedt C, Gorkhover T, Iwan B, Seibert MM, Osipov T, Walter P, Hart P, Bucher M, Ulmer A, Ray D, Carini G, Ferguson KR, Andersson I, Andreasson J, Hajdu J, Maia FRNC.

Sci Adv. 2019 May 3;5(5):eaav8801. doi: 10.1126/sciadv.aav8801. eCollection 2019 May.

3.

Supervised classification methods for flash X-ray single particle diffraction imaging.

Liu J, van der Schot G, Engblom S.

Opt Express. 2019 Feb 18;27(4):3884-3899. doi: 10.1364/OE.27.003884.

PMID:
30876013
4.

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.

Lundholm IV, Sellberg JA, Ekeberg T, Hantke MF, Okamoto K, van der Schot G, Andreasson J, Barty A, Bielecki J, Bruza P, Bucher M, Carron S, Daurer BJ, Ferguson K, Hasse D, Krzywinski J, Larsson DSD, Morgan A, Mühlig K, Müller M, Nettelblad C, Pietrini A, Reddy HKN, Rupp D, Sauppe M, Seibert M, Svenda M, Swiggers M, Timneanu N, Ulmer A, Westphal D, Williams G, Zani A, Faigel G, Chapman HN, Möller T, Bostedt C, Hajdu J, Gorkhover T, Maia FRNC.

IUCrJ. 2018 Sep 1;5(Pt 5):531-541. doi: 10.1107/S2052252518010047. eCollection 2018 Sep 1.

5.

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Kurta RP, Donatelli JJ, Yoon CH, Berntsen P, Bielecki J, Daurer BJ, DeMirci H, Fromme P, Hantke MF, Maia FRNC, Munke A, Nettelblad C, Pande K, Reddy HKN, Sellberg JA, Sierra RG, Svenda M, van der Schot G, Vartanyants IA, Williams GJ, Xavier PL, Aquila A, Zwart PH, Mancuso AP.

Phys Rev Lett. 2017 Oct 13;119(15):158102. doi: 10.1103/PhysRevLett.119.158102. Epub 2017 Oct 12.

6.

Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.

Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL.

Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.79.

7.

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2017 Apr 7;4(Pt 3):251-262. doi: 10.1107/S2052252517003591. eCollection 2017 May 1. Erratum in: IUCrJ. 2019 Apr 09;6(Pt 3):500.

8.

A data set from flash X-ray imaging of carboxysomes.

Hantke MF, Hasse D, Ekeberg T, John K, Svenda M, Loh D, Martin AV, Timneanu N, Larsson DS, van der Schot G, Carlsson GH, Ingelman M, Andreasson J, Westphal D, Iwan B, Uetrecht C, Bielecki J, Liang M, Stellato F, DePonte DP, Bari S, Hartmann R, Kimmel N, Kirian RA, Seibert MM, Mühlig K, Schorb S, Ferguson K, Bostedt C, Carron S, Bozek JD, Rolles D, Rudenko A, Foucar L, Epp SW, Chapman HN, Barty A, Andersson I, Hajdu J, Maia FR.

Sci Data. 2016 Aug 1;3:160061. doi: 10.1038/sdata.2016.61.

9.

Open data set of live cyanobacterial cells imaged using an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke MF, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian RA, Liang M, Stellato F, Bari S, Iwan B, Andreasson J, Timneanu N, Bielecki J, Westphal D, Nunes de Almeida F, Odić D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Carron S, Ferguson K, Rolles D, Rudenko A, Epp SW, Foucar L, Rudek B, Erk B, Hartmann R, Kimmel N, Holl P, Englert L, Loh ND, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Sci Data. 2016 Aug 1;3:160058. doi: 10.1038/sdata.2016.58.

10.

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.

Munke A, Andreasson J, Aquila A, Awel S, Ayyer K, Barty A, Bean RJ, Berntsen P, Bielecki J, Boutet S, Bucher M, Chapman HN, Daurer BJ, DeMirci H, Elser V, Fromme P, Hajdu J, Hantke MF, Higashiura A, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Reddy HK, Lan TY, Larsson DS, Liu H, Loh ND, Maia FR, Mancuso AP, Mühlig K, Nakagawa A, Nam D, Nelson G, Nettelblad C, Okamoto K, Ourmazd A, Rose M, van der Schot G, Schwander P, Seibert MM, Sellberg JA, Sierra RG, Song C, Svenda M, Timneanu N, Vartanyants IA, Westphal D, Wiedorn MO, Williams GJ, Xavier PL, Yoon CH, Zook J.

Sci Data. 2016 Aug 1;3:160064. doi: 10.1038/sdata.2016.64.

11.

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR.

van der Schot G, Bonvin AM.

J Biomol NMR. 2015 Aug;62(4):497-502. doi: 10.1007/s10858-015-9942-7. Epub 2015 May 17.

12.

Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

Ekeberg T, Svenda M, Abergel C, Maia FR, Seltzer V, Claverie JM, Hantke M, Jönsson O, Nettelblad C, van der Schot G, Liang M, DePonte DP, Barty A, Seibert MM, Iwan B, Andersson I, Loh ND, Martin AV, Chapman H, Bostedt C, Bozek JD, Ferguson KR, Krzywinski J, Epp SW, Rolles D, Rudenko A, Hartmann R, Kimmel N, Hajdu J.

Phys Rev Lett. 2015 Mar 6;114(9):098102. Epub 2015 Mar 2.

PMID:
25793853
13.

Imaging single cells in a beam of live cyanobacteria with an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke M, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian R, Liang M, Stellato F, Iwan B, Andreasson J, Timneanu N, Westphal D, Almeida FN, Odic D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Rolles D, Rudenko A, Epp S, Foucar L, Rudek B, Hartmann R, Kimmel N, Holl P, Englert L, Duane Loh NT, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Nat Commun. 2015 Feb 11;6:5704. doi: 10.1038/ncomms6704.

PMID:
25669616
14.

Improving 3D structure prediction from chemical shift data.

van der Schot G, Zhang Z, Vernon R, Shen Y, Vranken WF, Baker D, Bonvin AM, Lange OF.

J Biomol NMR. 2013 Sep;57(1):27-35. doi: 10.1007/s10858-013-9762-6. Epub 2013 Aug 3.

PMID:
23912841
15.

Blind testing of routine, fully automated determination of protein structures from NMR data.

Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, Jaravine V, Jonker HR, Kennedy MA, Lange OF, Liu G, Malliavin TE, Mani R, Mao B, Montelione GT, Nilges M, Rossi P, van der Schot G, Schwalbe H, Szyperski TA, Vendruscolo M, Vernon R, Vranken WF, Vries Sd, Vuister GW, Wu B, Yang Y, Bonvin AM.

Structure. 2012 Feb 8;20(2):227-36. doi: 10.1016/j.str.2012.01.002.

16.

CASD-NMR: critical assessment of automated structure determination by NMR.

Rosato A, Bagaria A, Baker D, Bardiaux B, Cavalli A, Doreleijers JF, Giachetti A, Guerry P, Güntert P, Herrmann T, Huang YJ, Jonker HR, Mao B, Malliavin TE, Montelione GT, Nilges M, Raman S, van der Schot G, Vranken WF, Vuister GW, Bonvin AM.

Nat Methods. 2009 Sep;6(9):625-6. doi: 10.1038/nmeth0909-625. No abstract available.

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