Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 165

1.

Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element.

Delavat F, Moritz R, van der Meer JR.

MBio. 2019 Jun 11;10(3). pii: e01133-19. doi: 10.1128/mBio.01133-19.

2.

Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities.

Pinto-Figueroa EA, Seddon E, Yashiro E, Buri A, Niculita-Hirzel H, van der Meer JR, Guisan A.

Front Microbiol. 2019 Apr 4;10:656. doi: 10.3389/fmicb.2019.00656. eCollection 2019.

3.

The urgent need for microbiology literacy in society.

Timmis K, Cavicchioli R, Garcia JL, Nogales B, Chavarría M, Stein L, McGenity TJ, Webster N, Singh BK, Handelsman J, de Lorenzo V, Pruzzo C, Timmis J, Martín JLR, Verstraete W, Jetten M, Danchin A, Huang W, Gilbert J, Lal R, Santos H, Lee SY, Sessitsch A, Bonfante P, Gram L, Lin RTP, Ron E, Karahan ZC, van der Meer JR, Artunkal S, Jahn D, Harper L.

Environ Microbiol. 2019 May;21(5):1513-1528. doi: 10.1111/1462-2920.14611. Epub 2019 Apr 11. No abstract available.

PMID:
30912268
4.

Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5.

Ellegaard KM, Brochet S, Bonilla-Rosso G, Emery O, Glover N, Hadadi N, Jaron KS, van der Meer JR, Robinson-Rechavi M, Sentchilo V, Tagini F; SAGE class 2016-17, Engel P.

Mol Ecol. 2019 May;28(9):2224-2237. doi: 10.1111/mec.15075. Epub 2019 May 29.

PMID:
30864192
5.

Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions.

Roggo C, Carraro N, van der Meer JR.

Sci Rep. 2019 Mar 7;9(1):3845. doi: 10.1038/s41598-019-40655-x.

6.

Bridging the Holistic-Reductionist Divide in Microbial Ecology.

Tecon R, Mitri S, Ciccarese D, Or D, van der Meer JR, Johnson DR.

mSystems. 2019 Feb 5;4(1). pii: e00265-18. doi: 10.1128/mSystems.00265-18. eCollection 2019 Jan-Feb.

7.

Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine.

Li YP, Carraro N, Yang N, Liu B, Xia X, Feng R, Saquib Q, Al-Wathnani HA, van der Meer JR, Rensing C.

Genes (Basel). 2018 Nov 23;9(12). pii: E573. doi: 10.3390/genes9120573.

8.

Host diet mediates a negative relationship between abundance and diversity of Drosophila gut microbiota.

Erkosar B, Yashiro E, Zajitschek F, Friberg U, Maklakov AA, van der Meer JR, Kawecki TJ.

Ecol Evol. 2018 Aug 29;8(18):9491-9502. doi: 10.1002/ece3.4444. eCollection 2018 Sep.

9.

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds.

Roggo C, Clerc EE, Hadadi N, Carraro N, Stocker R, van der Meer JR.

Appl Environ Microbiol. 2018 Aug 31;84(18). pii: e01362-18. doi: 10.1128/AEM.01362-18. Print 2018 Sep 15.

10.

Bacterial bioreporter detection of arsenic associated with iron oxides.

van Genuchten CM, Finger A, van der Meer JR, Peña J.

Environ Sci Process Impacts. 2018 Jun 20;20(6):913-922. doi: 10.1039/c8em00071a.

PMID:
29850698
11.

Prospects for harnessing biocide resistance for bioremediation and detoxification.

Atashgahi S, Sánchez-Andrea I, Heipieper HJ, van der Meer JR, Stams AJM, Smidt H.

Science. 2018 May 18;360(6390):743-746. doi: 10.1126/science.aar3778. Review.

PMID:
29773745
12.

Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Sci Rep. 2018 Apr 10;8(1):5758. doi: 10.1038/s41598-018-24253-x.

13.

Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element.

Miyazaki R, Yano H, Sentchilo V, van der Meer JR.

Sci Rep. 2018 Apr 3;8(1):5550. doi: 10.1038/s41598-018-23858-6.

14.

Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips.

Roggo C, Picioreanu C, Richard X, Mazza C, van Lintel H, van der Meer JR.

Environ Microbiol. 2018 Jan;20(1):241-258. doi: 10.1111/1462-2920.13982. Epub 2017 Dec 21.

PMID:
29124848
15.

Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster.

Erkosar B, Kolly S, van der Meer JR, Kawecki TJ.

MBio. 2017 Oct 24;8(5). pii: e01496-17. doi: 10.1128/mBio.01496-17.

16.

Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance.

Reimer A, Maffenbeier V, Dubey M, Sentchilo V, Tavares D, Gil MH, Beggah S, van der Meer JR.

Sci Rep. 2017 Aug 15;7(1):8245. doi: 10.1038/s41598-017-08035-5.

17.

Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 May 25;5(21). pii: e00434-17. doi: 10.1128/genomeA.00434-17.

18.

Editorial overview: Environmental biotechnology.

van der Meer JR, Gu MB.

Curr Opin Biotechnol. 2017 Jun;45:ix-xi. doi: 10.1016/j.copbio.2017.05.001. Epub 2017 May 17. No abstract available.

PMID:
28528169
19.

Draft Genome Sequence of Plantibacterflavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site.

Lumactud R, Fulthorpe R, Sentchilo V, van der Meer JR.

Genome Announc. 2017 Apr 27;5(17). pii: e00276-17. doi: 10.1128/genomeA.00276-17.

20.

The hidden life of integrative and conjugative elements.

Delavat F, Miyazaki R, Carraro N, Pradervand N, van der Meer JR.

FEMS Microbiol Rev. 2017 Jul 1;41(4):512-537. doi: 10.1093/femsre/fux008. Review.

21.

Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation.

Berset Y, Merulla D, Joublin A, Hatzimanikatis V, van der Meer JR.

ACS Synth Biol. 2017 May 19;6(5):862-874. doi: 10.1021/acssynbio.6b00364. Epub 2017 Feb 24.

PMID:
28215088
22.

Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.

Roggo C, van der Meer JR.

Curr Opin Biotechnol. 2017 Jun;45:24-33. doi: 10.1016/j.copbio.2016.11.023. Epub 2017 Jan 11. Review.

23.

The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand.

Morales M, Sentchilo V, Bertelli C, Komljenovic A, Kryuchkova-Mostacci N, Bourdilloud A, Linke B, Goesmann A, Harshman K, Segers F, Delapierre F, Fiorucci D, Seppey M, Trofimenco E, Berra P, El Taher A, Loiseau C, Roggero D, Sulfiotti M, Etienne A, Ruiz Buendia G, Pillard L, Escoriza A, Moritz R, Schneider C, Alfonso E, Ben Jeddou F, Selmoni O, Resch G, Greub G, Emery O, Dubey M, Pillonel T, Robinson-Rechavi M, van der Meer JR.

PLoS One. 2016 Nov 3;11(11):e0165850. doi: 10.1371/journal.pone.0165850. eCollection 2016.

24.

Challenges in microbial ecology: building predictive understanding of community function and dynamics.

Widder S, Allen RJ, Pfeiffer T, Curtis TP, Wiuf C, Sloan WT, Cordero OX, Brown SP, Momeni B, Shou W, Kettle H, Flint HJ, Haas AF, Laroche B, Kreft JU, Rainey PB, Freilich S, Schuster S, Milferstedt K, van der Meer JR, Groβkopf T, Huisman J, Free A, Picioreanu C, Quince C, Klapper I, Labarthe S, Smets BF, Wang H; Isaac Newton Institute Fellows, Soyer OS.

ISME J. 2016 Nov;10(11):2557-2568. doi: 10.1038/ismej.2016.45. Epub 2016 Mar 29. Review.

25.

Local Environmental Factors Drive Divergent Grassland Soil Bacterial Communities in the Western Swiss Alps.

Yashiro E, Pinto-Figueroa E, Buri A, Spangenberg JE, Adatte T, Niculita-Hirzel H, Guisan A, van der Meer JR.

Appl Environ Microbiol. 2016 Oct 14;82(21):6303-6316. Print 2016 Nov 1.

26.

Towards improved biomonitoring tools for an intensified sustainable multi-use environment.

van der Meer JR.

Microb Biotechnol. 2016 Sep;9(5):658-65. doi: 10.1111/1751-7915.12395. Epub 2016 Jul 29. Review.

27.

Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element.

Delavat F, Mitri S, Pelet S, van der Meer JR.

Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):E3375-83. doi: 10.1073/pnas.1604479113. Epub 2016 May 31.

28.

Immediate ecotoxicological effects of short-lived oil spills on marine biota.

Brussaard CP, Peperzak L, Beggah S, Wick LY, Wuerz B, Weber J, Samuel Arey J, van der Burg B, Jonas A, Huisman J, van der Meer JR.

Nat Commun. 2016 Apr 4;7:11206. doi: 10.1038/ncomms11206.

29.

An automated microreactor for semi-continuous biosensor measurements.

Buffi N, Beggah S, Truffer F, Geiser M, van Lintel H, Renaud P, van der Meer JR.

Lab Chip. 2016 Apr 21;16(8):1383-92. doi: 10.1039/c6lc00119j.

30.

Comparison of differential gene expression to water stress among bacteria with relevant pollutant-degradation properties.

Moreno-Forero SK, Rojas E, Beggah S, van der Meer JR.

Environ Microbiol Rep. 2016 Feb;8(1):91-102. doi: 10.1111/1758-2229.12356. Epub 2016 Jan 27.

PMID:
26616826
31.

Regulatable and Modulable Background Expression Control in Prokaryotic Synthetic Circuits by Auxiliary Repressor Binding Sites.

Merulla D, van der Meer JR.

ACS Synth Biol. 2016 Jan 15;5(1):36-45. doi: 10.1021/acssynbio.5b00111. Epub 2015 Sep 14.

PMID:
26348795
32.

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights.

Bertelli C, Aeby S, Chassot B, Clulow J, Hilfiker O, Rappo S, Ritzmann S, Schumacher P, Terrettaz C, Benaglio P, Falquet L, Farinelli L, Gharib WH, Goesmann A, Harshman K, Linke B, Miyazaki R, Rivolta C, Robinson-Rechavi M, van der Meer JR, Greub G.

Front Microbiol. 2015 Feb 19;6:101. doi: 10.3389/fmicb.2015.00101. eCollection 2015.

33.

Sphingomonas wittichii RW1 gene reporters interrogating the dibenzofuran metabolic network highlight conditions for early successful development in contaminated microcosms.

Coronado E, Valtat A, van der Meer JR.

Environ Microbiol Rep. 2015 Jun;7(3):480-8. doi: 10.1111/1758-2229.12276. Epub 2015 Apr 8.

PMID:
25683238
34.

Identification of genes potentially involved in solute stress response in Sphingomonas wittichii RW1 by transposon mutant recovery.

Coronado E, Roggo C, van der Meer JR.

Front Microbiol. 2014 Nov 4;5:585. doi: 10.3389/fmicb.2014.00585. eCollection 2014.

35.

Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.

Chronopoulou PM, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CP, McGenity TJ.

Microb Biotechnol. 2015 May;8(3):434-47. doi: 10.1111/1751-7915.12176. Epub 2014 Sep 24.

36.

The TetR-type MfsR protein of the integrative and conjugative element (ICE) ICEclc controls both a putative efflux system and initiation of ICE transfer.

Pradervand N, Delavat F, Sulser S, Miyazaki R, van der Meer JR.

J Bacteriol. 2014 Nov;196(22):3971-9. doi: 10.1128/JB.02129-14. Epub 2014 Sep 2.

37.

First day of an oil spill on the open sea: early mass transfers of hydrocarbons to air and water.

Gros J, Nabi D, Würz B, Wick LY, Brussaard CP, Huisman J, van der Meer JR, Reddy CM, Arey JS.

Environ Sci Technol. 2014 Aug 19;48(16):9400-11. doi: 10.1021/es502437e. Epub 2014 Aug 8.

PMID:
25103722
38.

Escherichia [corrected] coli ribose binding protein based bioreporters revisited.

Reimer A, Yagur-Kroll S, Belkin S, Roy S, van der Meer JR.

Sci Rep. 2014 Jul 9;4:5626. doi: 10.1038/srep05626. Erratum in: Sci Rep. 2014;4:7445.

39.

An operon of three transcriptional regulators controls horizontal gene transfer of the integrative and conjugative element ICEclc in Pseudomonas knackmussii B13.

Pradervand N, Sulser S, Delavat F, Miyazaki R, Lamas I, van der Meer JR.

PLoS Genet. 2014 Jun 19;10(6):e1004441. doi: 10.1371/journal.pgen.1004441. eCollection 2014 Jun. Erratum in: PLoS Genet. 2015 Apr;11(4):e1005130.

40.

Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand.

Moreno-Forero SK, van der Meer JR.

ISME J. 2015 Jan;9(1):150-65. doi: 10.1038/ismej.2014.101. Epub 2014 Jun 17.

41.

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

Miyazaki R, Bertelli C, Benaglio P, Canton J, De Coi N, Gharib WH, Gjoksi B, Goesmann A, Greub G, Harshman K, Linke B, Mikulic J, Mueller L, Nicolas D, Robinson-Rechavi M, Rivolta C, Roggo C, Roy S, Sentchilo V, Siebenthal AV, Falquet L, van der Meer JR.

Environ Microbiol. 2015 Jan;17(1):91-104. doi: 10.1111/1462-2920.12498. Epub 2014 May 28.

42.

Identification of opsA, a gene involved in solute stress mitigation and survival in soil, in the polycyclic aromatic hydrocarbon-degrading bacterium Novosphingobium sp. strain LH128.

Fida TT, Breugelmans P, Lavigne R, van der Meer JR, De Mot R, Vaysse PJ, Springael D.

Appl Environ Microbiol. 2014 Jun;80(11):3350-61. doi: 10.1128/AEM.00306-14. Epub 2014 Mar 21.

43.

Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells.

Truffer F, Buffi N, Merulla D, Beggah S, van Lintel H, Renaud P, van der Meer JR, Geiser M.

Rev Sci Instrum. 2014 Jan;85(1):015120. doi: 10.1063/1.4863333.

PMID:
24517825
44.

Life history analysis of integrative and conjugative element activation in growing microcolonies of Pseudomonas.

Reinhard F, van der Meer JR.

J Bacteriol. 2014 Apr;196(7):1425-34. doi: 10.1128/JB.01333-13. Epub 2014 Jan 24.

45.

Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds.

Scheublin TR, Deusch S, Moreno-Forero SK, Müller JA, van der Meer JR, Leveau JH.

Environ Microbiol. 2014 Jul;16(7):2212-25. doi: 10.1111/1462-2920.12375. Epub 2014 Jan 23.

PMID:
24373130
46.

Improved statistical analysis of low abundance phenomena in bimodal bacterial populations.

Reinhard F, van der Meer JR.

PLoS One. 2013 Oct 30;8(10):e78288. doi: 10.1371/journal.pone.0078288. eCollection 2013.

47.

Characterization of a MexAB-OprM efflux system necessary for productive metabolism of Pseudomonas azelaica HBP1 on 2-hydroxybiphenyl.

Czechowska K, Reimmann C, van der Meer JR.

Front Microbiol. 2013 Jul 19;4:203. doi: 10.3389/fmicb.2013.00203. eCollection 2013.

48.

A new large-DNA-fragment delivery system based on integrase activity from an integrative and conjugative element.

Miyazaki R, van der Meer JR.

Appl Environ Microbiol. 2013 Jul;79(14):4440-7. doi: 10.1128/AEM.00711-13. Epub 2013 May 17.

49.

Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1.

Roggo C, Coronado E, Moreno-Forero SK, Harshman K, Weber J, van der Meer JR.

Environ Microbiol. 2013 Oct;15(10):2681-95. doi: 10.1111/1462-2920.12125. Epub 2013 Apr 19.

PMID:
23601288
50.

Electrochemical As(III) whole-cell based biochip sensor.

Cortés-Salazar F, Beggah S, van der Meer JR, Girault HH.

Biosens Bioelectron. 2013 Sep 15;47:237-42. doi: 10.1016/j.bios.2013.03.011. Epub 2013 Mar 20.

PMID:
23584229

Supplemental Content

Loading ...
Support Center