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Items: 1 to 50 of 109

1.

The microbiome as a source of new enterprises and job creation: Considering clinical faecal and synthetic microbiome transplants and therapeutic regulation.

van der Lelie D, Taghavi S, Henry C, Gilbert JA.

Microb Biotechnol. 2017 Jan;10(1):4-5. doi: 10.1111/1751-7915.12597. Epub 2017 Jan 4. No abstract available.

2.

The soil microbiome influences grapevine-associated microbiota.

Zarraonaindia I, Owens SM, Weisenhorn P, West K, Hampton-Marcell J, Lax S, Bokulich NA, Mills DA, Martin G, Taghavi S, van der Lelie D, Gilbert JA.

MBio. 2015 Mar 24;6(2). pii: e02527-14. doi: 10.1128/mBio.02527-14.

3.

Selenium hyperaccumulators harbor a diverse endophytic bacterial community characterized by high selenium resistance and plant growth promoting properties.

Sura-de Jong M, Reynolds RJ, Richterova K, Musilova L, Staicu LC, Chocholata I, Cappa JJ, Taghavi S, van der Lelie D, Frantik T, Dolinova I, Strejcek M, Cochran AT, Lovecka P, Pilon-Smits EA.

Front Plant Sci. 2015 Mar 2;6:113. doi: 10.3389/fpls.2015.00113. eCollection 2015.

4.

Transcriptional responses to sucrose mimic the plant-associated life style of the plant growth promoting endophyte Enterobacter sp. 638.

Taghavi S, Wu X, Ouyang L, Zhang YB, Stadler A, McCorkle S, Zhu W, Maslov S, van der Lelie D.

PLoS One. 2015 Jan 21;10(1):e0115455. doi: 10.1371/journal.pone.0115455. eCollection 2015.

5.

The Potential of the Ni-Resistant TCE-Degrading Pseudomonas putida W619-TCE to Reduce Phytotoxicity and Improve Phytoremediation Efficiency of Poplar Cuttings on A Ni-TCE Co-Contamination.

Weyens N, Beckers B, Schellingen K, Ceulemans R, van der Lelie D, Newman L, Taghavi S, Carleer R, Vangronsveld J.

Int J Phytoremediation. 2015;17(1-6):40-8. doi: 10.1080/15226514.2013.828016.

PMID:
25174423
6.

Genome Sequence of Serratia plymuthica RVH1, Isolated from a Raw Vegetable-Processing Line.

Van Houdt R, Van der Lelie D, Izquierdo JA, Aertsen A, Masschelein J, Lavigne R, Michiels CW, Taghavi S.

Genome Announc. 2014 Feb 6;2(1). pii: e00021-14. doi: 10.1128/genomeA.00021-14.

7.

Bacteria associated with yellow lupine grown on a metal-contaminated soil: in vitro screening and in vivo evaluation for their potential to enhance Cd phytoextraction.

Weyens N, Gielen M, Beckers B, Boulet J, van der Lelie D, Taghavi S, Carleer R, Vangronsveld J.

Plant Biol (Stuttg). 2014 Sep;16(5):988-96. doi: 10.1111/plb.12141. Epub 2014 Jan 8.

PMID:
24400887
8.

Microbial terroir for wine grapes.

Gilbert JA, van der Lelie D, Zarraonaindia I.

Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):5-6. doi: 10.1073/pnas.1320471110. Epub 2013 Dec 5. No abstract available.

9.

A general strategy for the DNA-mediated self-assembly of functional nanoparticles into heterogeneous systems.

Zhang Y, Lu F, Yager KG, van der Lelie D, Gang O.

Nat Nanotechnol. 2013 Nov;8(11):865-72. doi: 10.1038/nnano.2013.209. Epub 2013 Oct 20.

PMID:
24141539
10.

Complete Genome Sequence of Clostridium sp. Strain DL-VIII, a Novel Solventogenic Clostridium Species Isolated from Anaerobic Sludge.

Taghavi S, Izquierdo JA, van der Lelie D.

Genome Announc. 2013 Aug 8;1(4). pii: e00605-13. doi: 10.1128/genomeA.00605-13.

11.

Complete genome sequence of Clostridium sp. strain BNL1100, a cellulolytic mesophile isolated from corn stover.

Li LL, Taghavi S, Izquierdo JA, van der Lelie D.

J Bacteriol. 2012 Dec;194(24):6982-3. doi: 10.1128/JB.01908-12.

12.

Heterogeneous nanoclusters assembled by PNA-templated double-stranded DNA.

Sun D, Stadler AL, Gurevich M, Palma E, Stach E, van der Lelie D, Gang O.

Nanoscale. 2012 Nov 7;4(21):6722-5. doi: 10.1039/c2nr31908j. Epub 2012 Oct 1.

PMID:
23026861
13.

Biotransformation of ferulic acid to 4-vinylguaiacol by Enterobacter soli and E. aerogenes.

Hunter WJ, Manter DK, van der Lelie D.

Curr Microbiol. 2012 Dec;65(6):752-7. doi: 10.1007/s00284-012-0222-4. Epub 2012 Sep 18.

PMID:
22986816
14.

Bioprospecting metagenomics for new glycoside hydrolases.

Gilbert J, Li LL, Taghavi S, McCorkle SM, Tringe S, van der Lelie D.

Methods Mol Biol. 2012;908:141-51. doi: 10.1007/978-1-61779-956-3_14.

PMID:
22843397
15.

Unlocking the potential of metagenomics through replicated experimental design.

Knight R, Jansson J, Field D, Fierer N, Desai N, Fuhrman JA, Hugenholtz P, van der Lelie D, Meyer F, Stevens R, Bailey MJ, Gordon JI, Kowalchuk GA, Gilbert JA.

Nat Biotechnol. 2012 Jun 7;30(6):513-20. doi: 10.1038/nbt.2235.

16.

The metagenome of an anaerobic microbial community decomposing poplar wood chips.

van der Lelie D, Taghavi S, McCorkle SM, Li LL, Malfatti SA, Monteleone D, Donohoe BS, Ding SY, Adney WS, Himmel ME, Tringe SG.

PLoS One. 2012;7(5):e36740. doi: 10.1371/journal.pone.0036740. Epub 2012 May 21.

17.

Crystal structure of ChrR--a quinone reductase with the capacity to reduce chromate.

Eswaramoorthy S, Poulain S, Hienerwadel R, Bremond N, Sylvester MD, Zhang YB, Berthomieu C, Van Der Lelie D, Matin A.

PLoS One. 2012;7(4):e36017. doi: 10.1371/journal.pone.0036017. Epub 2012 Apr 27.

18.

Continuous phase transformation in nanocube assemblies.

Zhang Y, Lu F, van der Lelie D, Gang O.

Phys Rev Lett. 2011 Sep 23;107(13):135701. Epub 2011 Sep 21.

PMID:
22026873
19.

Enzyme activity in dialkyl phosphate ionic liquids.

Thomas MF, Li LL, Handley-Pendleton JM, van der Lelie D, Dunn JJ, Wishart JF.

Bioresour Technol. 2011 Dec;102(24):11200-3. doi: 10.1016/j.biortech.2011.09.069. Epub 2011 Sep 25.

PMID:
22001053
20.

Biosupported bimetallic Pd-Au nanocatalysts for dechlorination of environmental contaminants.

De Corte S, Hennebel T, Fitts JP, Sabbe T, Bliznuk V, Verschuere S, van der Lelie D, Verstraete W, Boon N.

Environ Sci Technol. 2011 Oct 1;45(19):8506-13. doi: 10.1021/es2019324. Epub 2011 Sep 12.

PMID:
21877727
21.

Endophytes and their potential to deal with co-contamination of organic contaminants (toluene) and toxic metals (nickel) during phytoremediation.

Weyens N, Truyens S, Saenen E, Boulet J, Dupae J, Taghavi S, van der Lelie D, Carleer R, Vangronsveld J.

Int J Phytoremediation. 2011 Mar;13(3):244-55.

PMID:
21598790
22.

Palladium nanoparticles produced by fermentatively cultivated bacteria as catalyst for diatrizoate removal with biogenic hydrogen.

Hennebel T, Van Nevel S, Verschuere S, De Corte S, De Gusseme B, Cuvelier C, Fitts JP, van der Lelie D, Boon N, Verstraete W.

Appl Microbiol Biotechnol. 2011 Sep;91(5):1435-45. doi: 10.1007/s00253-011-3329-9. Epub 2011 May 17.

PMID:
21590286
23.

Site-selective binding of nanoparticles to double-stranded DNA via peptide nucleic acid "invasion".

Stadler AL, Sun D, Maye MM, van der Lelie D, Gang O.

ACS Nano. 2011 Apr 26;5(4):2467-74. doi: 10.1021/nn101355n. Epub 2011 Mar 9.

PMID:
21388119
24.

Complete genome of the plant growth-promoting rhizobacterium Pseudomonas putida BIRD-1.

Matilla MA, Pizarro-Tobias P, Roca A, Fernández M, Duque E, Molina L, Wu X, van der Lelie D, Gómez MJ, Segura A, Ramos JL.

J Bacteriol. 2011 Mar;193(5):1290. doi: 10.1128/JB.01281-10. Epub 2010 Dec 23.

25.

Sequencing of multiple clostridial genomes related to biomass conversion and biofuel production.

Hemme CL, Mouttaki H, Lee YJ, Zhang G, Goodwin L, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Tice H, Saunders E, Brettin T, Detter JC, Han CS, Pitluck S, Land ML, Hauser LJ, Kyrpides N, Mikhailova N, He Z, Wu L, Van Nostrand JD, Henrissat B, He Q, Lawson PA, Tanner RS, Lynd LR, Wiegel J, Fields MW, Arkin AP, Schadt CW, Stevenson BS, McInerney MJ, Yang Y, Dong H, Xing D, Ren N, Wang A, Huhnke RL, Mielenz JR, Ding SY, Himmel ME, Taghavi S, van der Lelie D, Rubin EM, Zhou J.

J Bacteriol. 2010 Dec;192(24):6494-6. doi: 10.1128/JB.01064-10. Epub 2010 Oct 1.

26.

Concomitant microbial generation of palladium nanoparticles and hydrogen to immobilize chromate.

Chidambaram D, Hennebel T, Taghavi S, Mast J, Boon N, Verstraete W, van der Lelie D, Fitts JP.

Environ Sci Technol. 2010 Oct 1;44(19):7635-40. doi: 10.1021/es101559r.

PMID:
20822130
27.

Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.

Wu X, Monchy S, Taghavi S, Zhu W, Ramos J, van der Lelie D.

FEMS Microbiol Rev. 2011 Mar;35(2):299-323. doi: 10.1111/j.1574-6976.2010.00249.x. Review.

28.

Potential of the TCE-degrading endophyte Pseudomonas putida W619-TCE to improve plant growth and reduce TCE phytotoxicity and evapotranspiration in poplar cuttings.

Weyens N, Truyens S, Dupae J, Newman L, Taghavi S, van der Lelie D, Carleer R, Vangronsveld J.

Environ Pollut. 2010 Sep;158(9):2915-9. doi: 10.1016/j.envpol.2010.06.004. Epub 2010 Jul 3.

PMID:
20598789
29.

Genome sequence of the plant growth promoting endophytic bacterium Enterobacter sp. 638.

Taghavi S, van der Lelie D, Hoffman A, Zhang YB, Walla MD, Vangronsveld J, Newman L, Monchy S.

PLoS Genet. 2010 May 13;6(5):e1000943. doi: 10.1371/journal.pgen.1000943.

30.

The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.

Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, Monchy S, Médigue C, Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M.

PLoS One. 2010 May 5;5(5):e10433. doi: 10.1371/journal.pone.0010433.

31.

Endophytic bacteria improve phytoremediation of Ni and TCE co-contamination.

Weyens N, Croes S, Dupae J, Newman L, van der Lelie D, Carleer R, Vangronsveld J.

Environ Pollut. 2010 Jul;158(7):2422-7. doi: 10.1016/j.envpol.2010.04.004. Epub 2010 May 11.

PMID:
20462680
32.

DNA-incorporating nanomaterials in biotechnological applications.

Stadler A, Chi C, van der Lelie D, Gang O.

Nanomedicine (Lond). 2010 Feb;5(2):319-34. doi: 10.2217/nnm.10.2. Review.

PMID:
20148641
33.

Bioaugmentation with engineered endophytic bacteria improves contaminant fate in phytoremediation.

Weyens N, van der Lelie D, Artois T, Smeets K, Taghavi S, Newman L, Carleer R, Vangronsveld J.

Environ Sci Technol. 2009 Dec 15;43(24):9413-8. doi: 10.1021/es901997z.

PMID:
20000537
34.

Rhizosphere chemical dialogues: plant-microbe interactions.

Badri DV, Weir TL, van der Lelie D, Vivanco JM.

Curr Opin Biotechnol. 2009 Dec;20(6):642-50. doi: 10.1016/j.copbio.2009.09.014. Epub 2009 Oct 28. Review.

PMID:
19875278
35.

Field note: hydraulic containment of a BTEX plume using poplar trees.

Barac T, Weyens N, Oeyen L, Taghavi S, van der Lelie D, Dubin D, Spliet M, Vangronsveld J.

Int J Phytoremediation. 2009 Jul;11(5):416-24. doi: 10.1080/15226510802655880.

PMID:
19810345
36.

Exploiting plant-microbe partnerships to improve biomass production and remediation.

Weyens N, van der Lelie D, Taghavi S, Newman L, Vangronsveld J.

Trends Biotechnol. 2009 Oct;27(10):591-8. doi: 10.1016/j.tibtech.2009.07.006. Epub 2009 Aug 13. Review.

PMID:
19683353
37.

Phytoremediation of contaminated soils and groundwater: lessons from the field.

Vangronsveld J, Herzig R, Weyens N, Boulet J, Adriaensen K, Ruttens A, Thewys T, Vassilev A, Meers E, Nehnevajova E, van der Lelie D, Mench M.

Environ Sci Pollut Res Int. 2009 Nov;16(7):765-94. doi: 10.1007/s11356-009-0213-6. Epub 2009 Jun 26. Review.

PMID:
19557448
38.

The versatility and adaptation of bacteria from the genus Stenotrophomonas.

Ryan RP, Monchy S, Cardinale M, Taghavi S, Crossman L, Avison MB, Berg G, van der Lelie D, Dow JM.

Nat Rev Microbiol. 2009 Jul;7(7):514-25. doi: 10.1038/nrmicro2163. Review.

PMID:
19528958
39.

Bioprospecting metagenomes: glycosyl hydrolases for converting biomass.

Li LL, McCorkle SR, Monchy S, Taghavi S, van der Lelie D.

Biotechnol Biofuels. 2009 May 18;2:10. doi: 10.1186/1754-6834-2-10.

40.

Bacteria associated with oak and ash on a TCE-contaminated site: characterization of isolates with potential to avoid evapotranspiration of TCE.

Weyens N, Taghavi S, Barac T, van der Lelie D, Boulet J, Artois T, Carleer R, Vangronsveld J.

Environ Sci Pollut Res Int. 2009 Nov;16(7):830-43. doi: 10.1007/s11356-009-0154-0. Epub 2009 Apr 29.

PMID:
19401827
41.

Stepwise surface encoding for high-throughput assembly of nanoclusters.

Maye MM, Nykypanchuk D, Cuisinier M, van der Lelie D, Gang O.

Nat Mater. 2009 May;8(5):388-91. doi: 10.1038/nmat2421. Epub 2009 Mar 29.

PMID:
19329992
42.

Phytoremediation: plant-endophyte partnerships take the challenge.

Weyens N, van der Lelie D, Taghavi S, Vangronsveld J.

Curr Opin Biotechnol. 2009 Apr;20(2):248-54. doi: 10.1016/j.copbio.2009.02.012. Epub 2009 Mar 25. Review.

PMID:
19327979
43.

Phase behavior of nanoparticles assembled by DNA linkers.

Xiong H, van der Lelie D, Gang O.

Phys Rev Lett. 2009 Jan 9;102(1):015504. Epub 2009 Jan 8.

PMID:
19257208
44.

ArsR arsenic-resistance regulatory protein from Cupriavidus metallidurans CH34.

Zhang YB, Monchy S, Greenberg B, Mergeay M, Gang O, Taghavi S, van der Lelie D.

Antonie Van Leeuwenhoek. 2009 Aug;96(2):161-70. doi: 10.1007/s10482-009-9313-z. Epub 2009 Feb 24.

PMID:
19238575
45.

Controllable g5p-protein-directed aggregation of ssDNA-gold nanoparticles.

Lee SK, Maye MM, Zhang YB, Gang O, van der Lelie D.

Langmuir. 2009 Jan 20;25(2):657-60. doi: 10.1021/la803596q.

PMID:
19072316
46.

Genome survey and characterization of endophytic bacteria exhibiting a beneficial effect on growth and development of poplar trees.

Taghavi S, Garafola C, Monchy S, Newman L, Hoffman A, Weyens N, Barac T, Vangronsveld J, van der Lelie D.

Appl Environ Microbiol. 2009 Feb;75(3):748-57. doi: 10.1128/AEM.02239-08. Epub 2008 Dec 5.

47.

Lead(II) resistance in Cupriavidus metallidurans CH34: interplay between plasmid and chromosomally-located functions.

Taghavi S, Lesaulnier C, Monchy S, Wattiez R, Mergeay M, van der Lelie D.

Antonie Van Leeuwenhoek. 2009 Aug;96(2):171-82. doi: 10.1007/s10482-008-9289-0. Epub 2008 Oct 24.

PMID:
18953667
48.

Microbial community dynamics in uranium contaminated subsurface sediments under biostimulated conditions with high nitrate and nickel pressure.

Moreels D, Crosson G, Garafola C, Monteleone D, Taghavi S, Fitts JP, van der Lelie D.

Environ Sci Pollut Res Int. 2008 Sep;15(6):481-91. doi: 10.1007/s11356-008-0034-z. Epub 2008 Aug 19.

PMID:
18712423
49.

Decolorization, cytotoxicity, and genotoxicity reduction during a combined ozonation/fungal treatment of dye-contaminated wastewater.

Vanhulle S, Trovaslet M, Enaud E, Lucas M, Taghavi S, Van der Lelie D, Van Aken B, Foret M, Onderwater RC, Wesenberg D, Agathos SN, Schneider YJ, Corbisier AM.

Environ Sci Technol. 2008 Jan 15;42(2):584-9.

PMID:
18284166
50.

DNA linker-mediated crystallization of nanocolloids.

Xiong H, van der Lelie D, Gang O.

J Am Chem Soc. 2008 Feb 27;130(8):2442-3. doi: 10.1021/ja710710j. Epub 2008 Feb 5. No abstract available.

PMID:
18247620

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