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Items: 1 to 50 of 69

1.

The evolution of subtype B HIV-1 tat in the Netherlands during 1985-2012.

van der Kuyl AC, Vink M, Zorgdrager F, Bakker M, Wymant C, Hall M, Gall A, Blanquart F, Berkhout B, Fraser C, Cornelissen M; BEEHIVE Collaboration.

Virus Res. 2018 May 2;250:51-64. doi: 10.1016/j.virusres.2018.04.008. Epub 2018 Apr 11.

2.

Workup of Human Blood Samples for Deep Sequencing of HIV-1 Genomes.

Cornelissen M, Gall A, van der Kuyl A, Wymant C, Blanquart F, Fraser C, Berkhout B.

Methods Mol Biol. 2018;1746:55-61. doi: 10.1007/978-1-4939-7683-6_5.

PMID:
29492886
3.

HIV-1 tolerates changes in A-count in a small segment of the pol gene.

Klaver B, van der Velden Y, van Hemert F, van der Kuyl AC, Berkhout B.

Retrovirology. 2017 Sep 5;14(1):43. doi: 10.1186/s12977-017-0367-0.

4.

Impact of the biased nucleotide composition of viral RNA genomes on RNA structure and codon usage.

van Hemert F, van der Kuyl AC, Berkhout B.

J Gen Virol. 2016 Oct;97(10):2608-2619. doi: 10.1099/jgv.0.000579. Epub 2016 Aug 11.

PMID:
27519195
5.

From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.

Cornelissen M, Gall A, Vink M, Zorgdrager F, Binter Š, Edwards S, Jurriaans S, Bakker M, Ong SH, Gras L, van Sighem A, Bezemer D, de Wolf F, Reiss P, Kellam P, Berkhout B, Fraser C, van der Kuyl AC; BEEHIVE Consortium.

Virus Res. 2017 Jul 15;239:10-16. doi: 10.1016/j.virusres.2016.08.004. Epub 2016 Aug 4.

6.

Widespread hepatitis B virus genotype G (HBV-G) infection during the early years of the HIV epidemic in the Netherlands among men who have sex with men.

Cornelissen M, Zorgdrager F, Bruisten SM, Bakker M, Berkhout B, van der Kuyl AC.

BMC Infect Dis. 2016 Jun 10;16:268. doi: 10.1186/s12879-016-1599-7.

7.

The Neutralizing Antibody Response in an Individual with Triple HIV-1 Infection Remains Directed at the First Infecting Subtype.

Cornelissen M, Euler Z, van den Kerkhof TL, van Gils MJ, Boeser-Nunnink BD, Kootstra NA, Zorgdrager F, Schuitemaker H, Prins JM, Sanders RW, van der Kuyl AC.

AIDS Res Hum Retroviruses. 2016 Oct/Nov;32(10-11):1135-1142. Epub 2016 Feb 24.

PMID:
26910384
8.

Viral metagenomics in drug-naïve, first-onset schizophrenia patients with prominent negative symptoms.

Canuti M, van Beveren NJ, Jazaeri Farsani SM, de Vries M, Deijs M, Jebbink MF, Zaaijer HL, van Schaik BD, van Kampen AH, van der Kuyl AC, de Haan L, Storosum JG, van der Hoek L.

Psychiatry Res. 2015 Oct 30;229(3):678-84. doi: 10.1016/j.psychres.2015.08.025. Epub 2015 Aug 15.

PMID:
26304023
9.

On the nucleotide composition and structure of retroviral RNA genomes.

van Hemert F, van der Kuyl AC, Berkhout B.

Virus Res. 2014 Nov 26;193:16-23. doi: 10.1016/j.virusres.2014.03.019. Epub 2014 Mar 24.

PMID:
24675274
10.

High prevalence of hepatitis B virus dual infection with genotypes A and G in HIV-1 infected men in Amsterdam, the Netherlands, during 2000-2011.

van der Kuyl AC, Zorgdrager F, Hogema B, Bakker M, Jurriaans S, Back NK, Berkhout B, Zaaijer HL, Cornelissen M.

BMC Infect Dis. 2013 Nov 14;13:540. doi: 10.1186/1471-2334-13-540.

11.

Translational HIV-1 research: from routine diagnostics to new virology insights in Amsterdam, the Netherlands during 1983-2013.

van der Kuyl AC, Bakker M, Jurriaans S, Back NK, Pasternak AO, Cornelissen M, Berkhout B.

Retrovirology. 2013 Aug 28;10:93. doi: 10.1186/1742-4690-10-93. Review.

12.

The A-nucleotide preference of HIV-1 in the context of its structured RNA genome.

van Hemert FJ, van der Kuyl AC, Berkhout B.

RNA Biol. 2013 Feb;10(2):211-5. doi: 10.4161/rna.22896. Epub 2012 Dec 12.

13.

The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus.

van der Kuyl AC, Berkhout B.

Retrovirology. 2012 Nov 6;9:92. doi: 10.1186/1742-4690-9-92. Review.

14.

HIV infection and HERV expression: a review.

van der Kuyl AC.

Retrovirology. 2012 Jan 16;9:6. doi: 10.1186/1742-4690-9-6. Review.

15.

HIV-1 dual infection is associated with faster CD4+ T-cell decline in a cohort of men with primary HIV infection.

Cornelissen M, Pasternak AO, Grijsen ML, Zorgdrager F, Bakker M, Blom P, Prins JM, Jurriaans S, van der Kuyl AC.

Clin Infect Dis. 2012 Feb 15;54(4):539-47. doi: 10.1093/cid/cir849. Epub 2011 Dec 9.

PMID:
22157174
16.

Characterization of a full-length endogenous beta-retrovirus, EqERV-beta1, in the genome of the horse (Equus caballus).

van der Kuyl AC.

Viruses. 2011 Jun;3(6):620-8. doi: 10.3390/v3060620. Epub 2011 Jun 1.

17.

XMRV: not a mousy virus.

van der Kuyl AC, Berkhout B.

J Formos Med Assoc. 2011 May;110(5):273-4. doi: 10.1016/S0929-6646(11)60042-9. No abstract available.

18.

Unusual cluster of HIV type 1 dual infections in Groningen, The Netherlands.

van der Kuyl AC, Jurriaans S, Back NK, Sprenger HG, van der Werf TS, Zorgdrager F, Berkhout B, Cornelissen M.

AIDS Res Hum Retroviruses. 2011 Apr;27(4):429-33. doi: 10.1089/aid.2010.0175. Epub 2010 Nov 18.

PMID:
21087141
19.

Generation of representative primary virus isolates from blood plasma after isolation of HIV-1 with CD44 MicroBeads.

Cornelissen M, Heeregrave EJ, Zorgdrager F, Pollakis G, Paxton WA, van der Kuyl AC.

Arch Virol. 2010 Dec;155(12):2017-22. doi: 10.1007/s00705-010-0806-x. Epub 2010 Sep 24.

20.

Lack of detection of XMRV in seminal plasma from HIV-1 infected men in The Netherlands.

Cornelissen M, Zorgdrager F, Blom P, Jurriaans S, Repping S, van Leeuwen E, Bakker M, Berkhout B, van der Kuyl AC.

PLoS One. 2010 Aug 10;5(8):e12040. doi: 10.1371/journal.pone.0012040.

21.

Analysis of infectious virus clones from two HIV-1 superinfection cases suggests that the primary strains have lower fitness.

van der Kuyl AC, Kozaczynska K, Ariën KK, Gali Y, Balázs VR, Dekker SJ, Zorgdrager F, Vanham G, Berkhout B, Cornelissen M.

Retrovirology. 2010 Jul 20;7:60. doi: 10.1186/1742-4690-7-60.

22.

HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients.

van der Kuyl AC, Jurriaans S, Pollakis G, Bakker M, Cornelissen M.

AIDS. 2010 Jun 19;24(10):1607-8. doi: 10.1097/QAD.0b013e32833b318f. No abstract available.

PMID:
20539098
23.

Of Mice and Men: On the Origin of XMRV.

van der Kuyl AC, Cornelissen M, Berkhout B.

Front Microbiol. 2011 Jan 17;1:147. doi: 10.3389/fmicb.2010.00147. eCollection 2010.

24.

Multiple transmissions of a stable human leucocyte antigen-B27 cytotoxic T-cell-escape strain of HIV-1 in The Netherlands.

Cornelissen M, Hoogland FM, Back NK, Jurriaans S, Zorgdrager F, Bakker M, Brinkman K, Prins M, van der Kuyl AC.

AIDS. 2009 Jul 31;23(12):1495-500. doi: 10.1097/QAD.0b013e32832d9267.

PMID:
19487902
25.

Incidence of human immunodeficiency virus type 1 dual infections in Amsterdam, The Netherlands, during 2003-2007.

van der Kuyl AC, Zorgdrager F, Jurriaans S, Back NK, Prins JM, Brinkman K, van Eeden A, Bakker M, Cornelissen M.

Clin Infect Dis. 2009 Apr 1;48(7):973-8. doi: 10.1086/597356.

PMID:
19231977
26.

Severe anaemia is not associated with HIV-1 env gene characteristics in Malawian children.

Calis JC, Rotteveel HP, van der Kuyl AC, Zorgdrager F, Kachala D, van Hensbroek MB, Cornelissen M.

BMC Infect Dis. 2008 Feb 29;8:26. doi: 10.1186/1471-2334-8-26.

27.

Combination antiretroviral therapy failure and HIV super-infection.

Bezemer D, van Sighem A, de Wolf F, Cornelissen M, van der Kuyl AC, Jurriaans S, van der Hoek L, Prins M, Coutinho RA, Lukashov VV.

AIDS. 2008 Jan 11;22(2):309-11.

PMID:
18097235
28.

Identifying HIV-1 dual infections.

van der Kuyl AC, Cornelissen M.

Retrovirology. 2007 Sep 24;4:67. Review.

29.

A sudden rise in viral load is infrequently associated with HIV-1 superinfection.

Jurriaans S, Kozaczynska K, Zorgdrager F, Steingrover R, Prins JM, van der Kuyl AC, Cornelissen M.

J Acquir Immune Defic Syndr. 2008 Jan 1;47(1):69-73.

PMID:
17891042
30.

HIV-1 sequence evolution in vivo after superinfection with three viral strains.

Kozaczynska K, Cornelissen M, Reiss P, Zorgdrager F, van der Kuyl AC.

Retrovirology. 2007 Aug 23;4:59.

31.

Routine HIV-1 genotyping as a tool to identify dual infections.

Cornelissen M, Jurriaans S, Kozaczynska K, Prins JM, Hamidjaja RA, Zorgdrager F, Bakker M, Back N, van der Kuyl AC.

AIDS. 2007 Apr 23;21(7):807-11.

PMID:
17415035
32.

Sialoadhesin (CD169) expression in CD14+ cells is upregulated early after HIV-1 infection and increases during disease progression.

van der Kuyl AC, van den Burg R, Zorgdrager F, Groot F, Berkhout B, Cornelissen M.

PLoS One. 2007 Feb 28;2(2):e257.

33.
34.

Retroviral superinfection resistance.

Nethe M, Berkhout B, van der Kuyl AC.

Retrovirology. 2005 Aug 18;2:52. Review.

35.

Cytomegalovirus and human herpesvirus 8 DNA detection in peripheral blood monocytic cells of AIDS patients: correlations with the presence of Kaposi's sarcoma and CMV disease.

van der Kuyl AC, Polstra AM, van den Burg R, Jan Weverling G, Goudsmit J, Cornelissen M.

J Med Virol. 2005 Aug;76(4):541-6.

PMID:
15977227
36.

Triple HIV-1 infection.

van der Kuyl AC, Kozaczynska K, van den Burg R, Zorgdrager F, Back N, Jurriaans S, Berkhout B, Reiss P, Cornelissen M.

N Engl J Med. 2005 Jun 16;352(24):2557-9. No abstract available.

37.
38.

SIVdrl detection in captive mandrills: are mandrills infected with a third strain of simian immunodeficiency virus?

van der Kuyl AC, van den Burg R, Hoyer MJ, Gruters RA, Osterhaus AD, Berkhout B.

Retrovirology. 2004 Nov 1;1:36.

39.
40.

HIV-1 seroreversion in an HIV-1-seropositive patient treated during acute infection with highly active antiretroviral therapy and mycophenolate mofetil.

Jurriaans S, Sankatsing SU, Prins JM, Schuitemaker H, Lange J, Van Der Kuyl AC, Cornelissen M.

AIDS. 2004 Jul 23;18(11):1607-8. No abstract available.

PMID:
15238784
41.

An IL-8 gene promoter polymorphism is associated with the risk of the development of AIDS-related Kaposi's sarcoma: a case-control study.

van der Kuyl AC, Polstra AM, Weverling GJ, Zorgdrager F, van den Burg R, Cornelissen M.

AIDS. 2004 May 21;18(8):1206-8.

PMID:
15166538
42.

Multicentric Castleman's disease and Kaposi's sarcoma in a cyclosporin treated, HIV-1 negative patient: case report.

Bollen J, Polstra A, Van Der Kuyl A, Weel J, Noorduyn L, Van Oers M, Cornelissen M.

BMC Blood Disord. 2003 Dec 11;3(1):3.

43.

Gene expression profile of AIDS-related Kaposi's sarcoma.

Cornelissen M, van der Kuyl AC, van den Burg R, Zorgdrager F, van Noesel CJ, Goudsmit J.

BMC Cancer. 2003 Mar 18;3:7.

44.

Primary effect of chemotherapy on the transcription profile of AIDS-related Kaposi's sarcoma.

van der Kuyl AC, van den Burg R, Zorgdrager F, Dekker JT, Maas J, van Noesel CJ, Goudsmit J, Cornelissen M.

BMC Cancer. 2002 Sep 2;2:21. Epub 2002 Sep 2.

45.
46.

Phylogenetic relationships among the species of the genus Testudo (Testudines: Testudinidae) inferred from mitochondrial 12S rRNA gene sequences.

van der Kuyl AC, Ph Ballasina DL, Dekker JT, Maas J, Willemsen RE, Goudsmit J.

Mol Phylogenet Evol. 2002 Feb;22(2):174-83.

PMID:
11820839
47.
48.

Routine DNA analysis based on 12S rRNA gene sequencing as a tool in the management of captive primates.

van der Kuyl AC, van Gennep DR, Dekker JT, Goudsmit J.

J Med Primatol. 2000 Oct;29(5):309-17.

PMID:
11198014
49.

Routine DNA analysis based on 12S rRNA gene sequencing as a tool in the management of captive primates.

Van Der Kuyl AC, Van Gennep DR, Dekker JT, Goudsmit J.

J Med Primatol. 2000 Oct;29(5):307-315.

PMID:
11168820
50.

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