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Items: 32

1.

High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow.

Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C.

PLoS One. 2019 Jun 27;14(6):e0210928. doi: 10.1371/journal.pone.0210928. eCollection 2019.

2.

Apple whole genome sequences: recent advances and new prospects.

Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, van Nocker S, Gottschalk C, Costa F, Chagné D, Zhang X, Patocchi A, Gardiner SE, Hardner C, Kumar S, Laurens F, Bucher E, Main D, Jung S, Vanderzande S.

Hortic Res. 2019 Apr 5;6:59. doi: 10.1038/s41438-019-0141-7. eCollection 2019. Review.

3.

The red bayberry genome and genetic basis of sex determination.

Jia HM, Jia HJ, Cai QL, Wang Y, Zhao HB, Yang WF, Wang GY, Li YH, Zhan DL, Shen YT, Niu QF, Chang L, Qiu J, Zhao L, Xie HB, Fu WY, Jin J, Li XW, Jiao Y, Zhou CC, Tu T, Chai CY, Gao JL, Fan LJ, van de Weg E, Wang JY, Gao ZS.

Plant Biotechnol J. 2019 Feb;17(2):397-409. doi: 10.1111/pbi.12985. Epub 2018 Aug 10.

4.

An integrated approach for increasing breeding efficiency in apple and peach in Europe.

Laurens F, Aranzana MJ, Arus P, Bassi D, Bink M, Bonany J, Caprera A, Corelli-Grappadelli L, Costes E, Durel CE, Mauroux JB, Muranty H, Nazzicari N, Pascal T, Patocchi A, Peil A, Quilot-Turion B, Rossini L, Stella A, Troggio M, Velasco R, van de Weg E.

Hortic Res. 2018 Mar 1;5:11. doi: 10.1038/s41438-018-0016-3. eCollection 2018. Review.

5.

Predicting Flowering Behavior and Exploring Its Genetic Determinism in an Apple Multi-family Population Based on Statistical Indices and Simplified Phenotyping.

Durand JB, Allard A, Guitton B, van de Weg E, Bink MCAM, Costes E.

Front Plant Sci. 2017 Jun 7;8:858. doi: 10.3389/fpls.2017.00858. eCollection 2017.

6.

Pedigree-Based Analysis in a Multiparental Population of Octoploid Strawberry Reveals QTL Alleles Conferring Resistance to Phytophthora cactorum.

Mangandi J, Verma S, Osorio L, Peres NA, van de Weg E, Whitaker VM.

G3 (Bethesda). 2017 Jun 7;7(6):1707-1719. doi: 10.1534/g3.117.042119.

7.

Integrated QTL detection for key breeding traits in multiple peach progenies.

Hernández Mora JR, Micheletti D, Bink M, Van de Weg E, Cantín C, Nazzicari N, Caprera A, Dettori MT, Micali S, Banchi E, Campoy JA, Dirlewanger E, Lambert P, Pascal T, Troggio M, Bassi D, Rossini L, Verde I, Quilot-Turion B, Laurens F, Arús P, Aranzana MJ.

BMC Genomics. 2017 Jun 6;18(1):404. doi: 10.1186/s12864-017-3783-6.

8.

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development.

Daccord N, Celton JM, Linsmith G, Becker C, Choisne N, Schijlen E, van de Geest H, Bianco L, Micheletti D, Velasco R, Di Pierro EA, Gouzy J, Rees DJG, Guérif P, Muranty H, Durel CE, Laurens F, Lespinasse Y, Gaillard S, Aubourg S, Quesneville H, Weigel D, van de Weg E, Troggio M, Bucher E.

Nat Genet. 2017 Jul;49(7):1099-1106. doi: 10.1038/ng.3886. Epub 2017 Jun 5.

PMID:
28581499
9.

Deciphering the genetic control of fruit texture in apple by multiple family-based analysis and genome-wide association.

Di Guardo M, Bink MCAM, Guerra W, Letschka T, Lozano L, Busatto N, Poles L, Tadiello A, Bianco L, Visser RGF, van de Weg E, Costa F.

J Exp Bot. 2017 Mar 1;68(7):1451-1466. doi: 10.1093/jxb/erx017.

10.

Elucidation of the 'Honeycrisp' pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set.

Howard NP, van de Weg E, Bedford DS, Peace CP, Vanderzande S, Clark MD, Teh SL, Cai L, Luby JJ.

Hortic Res. 2017 Feb 22;4:17003. doi: 10.1038/hortres.2017.3. eCollection 2017.

11.

Frequency of a natural truncated allele of MdMLO19 in the germplasm of Malus domestica.

Pessina S, Palmieri L, Bianco L, Gassmann J, van de Weg E, Visser RGF, Magnago P, Schouten HJ, Bai Y, Riccardo Velasco R, Malnoy M.

Mol Breed. 2017;37(1):7. doi: 10.1007/s11032-016-0610-8. Epub 2017 Jan 4.

12.

Public Availability of a Genotyped Segregating Population May Foster Marker Assisted Breeding (MAB) and Quantitative Trait Loci (QTL) Discovery: An Example Using Strawberry.

Hancock JF, Sooriyapathirana SS, Bassil NV, Stegmeir T, Cai L, Finn CE, Van de Weg E, Weebadde CK.

Front Plant Sci. 2016 May 9;7:619. doi: 10.3389/fpls.2016.00619. eCollection 2016.

13.

Erratum to: A qRT-PCR assay for the expression of all Mal d 1 isoallergen genes.

Pagliarani G, Paris R, Arens P, Tartarini S, Ricci G, Smulders MJ, Van De Weg EW.

BMC Plant Biol. 2016 Apr 8;16:83. doi: 10.1186/s12870-016-0757-9. No abstract available.

14.

Detecting QTLs and putative candidate genes involved in budbreak and flowering time in an apple multiparental population.

Allard A, Bink MC, Martinez S, Kelner JJ, Legave JM, di Guardo M, Di Pierro EA, Laurens F, van de Weg EW, Costes E.

J Exp Bot. 2016 Apr;67(9):2875-88. doi: 10.1093/jxb/erw130. Epub 2016 Mar 31.

15.

Development and validation of the Axiom(®) Apple480K SNP genotyping array.

Bianco L, Cestaro A, Linsmith G, Muranty H, Denancé C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, Van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M.

Plant J. 2016 Apr;86(1):62-74. doi: 10.1111/tpj.13145.

16.

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species.

Di Guardo M, Micheletti D, Bianco L, Koehorst-van Putten HJ, Longhi S, Costa F, Aranzana MJ, Velasco R, Arús P, Troggio M, van de Weg EW.

Bioinformatics. 2015 Dec 1;31(23):3873-4. doi: 10.1093/bioinformatics/btv446. Epub 2015 Aug 6.

17.

Genetic diversity of male and female Chinese bayberry (Myrica rubra) populations and identification of sex-associated markers.

Jia HM, Jiao Y, Wang GY, Li YH, Jia HJ, Wu HX, Chai CY, Dong X, Guo Y, Zhang L, Gao QK, Chen W, Song LJ, van de Weg E, Gao ZS.

BMC Genomics. 2015 May 19;16:394. doi: 10.1186/s12864-015-1602-5.

18.

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa.

Bassil NV, Davis TM, Zhang H, Ficklin S, Mittmann M, Webster T, Mahoney L, Wood D, Alperin ES, Rosyara UR, Koehorst-Vanc Putten H, Monfort A, Sargent DJ, Amaya I, Denoyes B, Bianco L, van Dijk T, Pirani A, Iezzoni A, Main D, Peace C, Yang Y, Whitaker V, Verma S, Bellon L, Brew F, Herrera R, van de Weg E.

BMC Genomics. 2015 Mar 7;16:155. doi: 10.1186/s12864-015-1310-1.

19.

Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M.

PLoS One. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377. eCollection 2014.

20.

Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map.

van Dijk T, Pagliarani G, Pikunova A, Noordijk Y, Yilmaz-Temel H, Meulenbroek B, Visser RG, van de Weg E.

BMC Plant Biol. 2014 Mar 1;14:55. doi: 10.1186/1471-2229-14-55.

21.

Erosion of quantitative host resistance in the apple×Venturia inaequalis pathosystem.

Caffier V, Lasserre-Zuber P, Giraud M, Lascostes M, Stievenard R, Lemarquand A, van de Weg E, Expert P, Denancé C, Didelot F, Le Cam B, Durel CE.

Infect Genet Evol. 2014 Oct;27:481-9. doi: 10.1016/j.meegid.2014.02.003. Epub 2014 Feb 14.

PMID:
24530903
22.

Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra).

Jiao Y, Jia HM, Li XW, Chai ML, Jia HJ, Chen Z, Wang GY, Chai CY, van de Weg E, Gao ZS.

BMC Genomics. 2012 May 23;13:201. doi: 10.1186/1471-2164-13-201.

23.

Genomic organisation of the Mal d 1 gene cluster on linkage group 16 in apple.

Pagliarani G, Paris R, Iorio AR, Tartarini S, Del Duca S, Arens P, Peters S, van de Weg E.

Mol Breed. 2012 Mar;29(3):759-778. Epub 2011 Jun 24.

24.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

25.

Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids.

van Dijk T, Noordijk Y, Dubos T, Bink MC, Meulenbroek BJ, Visser RG, van de Weg E.

BMC Plant Biol. 2012 Feb 17;12:25. doi: 10.1186/1471-2229-12-25.

26.

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16.

Khan SA, Chibon PY, de Vos RC, Schipper BA, Walraven E, Beekwilder J, van Dijk T, Finkers R, Visser RG, van de Weg EW, Bovy A, Cestaro A, Velasco R, Jacobsen E, Schouten HJ.

J Exp Bot. 2012 May;63(8):2895-908. doi: 10.1093/jxb/err464. Epub 2012 Feb 13.

27.

Genomic characterization of putative allergen genes in peach/almond and their synteny with apple.

Chen L, Zhang S, Illa E, Song L, Wu S, Howad W, Arús P, van de Weg E, Chen K, Gao Z.

BMC Genomics. 2008 Nov 17;9:543. doi: 10.1186/1471-2164-9-543.

28.

Assessment of allelic diversity in intron-containing Mal d 1 genes and their association to apple allergenicity.

Gao Z, van de Weg EW, Matos CI, Arens P, Bolhaar ST, Knulst AC, Li Y, Hoffmann-Sommergruber K, Gilissen LJ.

BMC Plant Biol. 2008 Nov 13;8:116. doi: 10.1186/1471-2229-8-116.

29.

Measurement of lipid transfer protein in 88 apple cultivars.

Sancho AI, van Ree R, van Leeuwen A, Meulenbroek BJ, van de Weg EW, Gilissen LJ, Puehringer H, Laimer M, Martinelli A, Zaccharini M, Vazquez-Cortés S, Fernandez-Rivas M, Hoffmann-Sommergruber K, Mills EN, Zuidmeer L.

Int Arch Allergy Immunol. 2008;146(1):19-26. Epub 2007 Dec 14.

PMID:
18087158
30.

Allergenicity assessment of apple cultivars: hurdles in quantifying labile fruit allergens.

Zuidmeer L, van Leeuwen WA, Kleine Budde I, Breiteneder H, Ma Y, Mills C, Sancho AI, Meulenbroek EJ, van de Weg E, Gilissen L, Ferreira F, Hoffmann-Sommergruber K, van Ree R.

Int Arch Allergy Immunol. 2006;141(3):230-40. Epub 2006 Aug 22.

PMID:
16926543
31.

Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple.

Calenge F, Van der Linden CG, Van de Weg E, Schouten HJ, Van Arkel G, Denancé C, Durel CE.

Theor Appl Genet. 2005 Feb;110(4):660-8. Epub 2005 Jan 13.

PMID:
15647920
32.

[On nursing education in Yugoslavia].

van de Weg E.

Tijdschr Ziekenverpl. 1968 May 1;9:378. Dutch. No abstract available.

PMID:
5185533

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