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Items: 1 to 50 of 111

1.

The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis.

Majsec K, Bhuiyan NH, Sun Q, Kumari S, Kumar V, Ware D, van Wijk KJ.

Plant Cell. 2017 Nov;29(11):2687-2710. doi: 10.1105/tpc.17.00481. Epub 2017 Sep 25. Review.

2.

Functions and substrates of plastoglobule-localized metallopeptidase PGM48.

Bhuiyan NH, van Wijk KJ.

Plant Signal Behav. 2017 Jun 3;12(6):e1331197. doi: 10.1080/15592324.2017.1331197. Epub 2017 May 23.

3.

Accumulation of adverse childhood events and overweight in children: A systematic review and meta-analysis.

Elsenburg LK, van Wijk KJE, Liefbroer AC, Smidt N.

Obesity (Silver Spring). 2017 May;25(5):820-832. doi: 10.1002/oby.21797. Epub 2017 Apr 3. Review.

4.

Plastoglobuli: Plastid Microcompartments with Integrated Functions in Metabolism, Plastid Developmental Transitions, and Environmental Adaptation.

van Wijk KJ, Kessler F.

Annu Rev Plant Biol. 2017 Apr 28;68:253-289. doi: 10.1146/annurev-arplant-043015-111737. Epub 2017 Jan 25. Review.

PMID:
28125283
5.

The Plastoglobule-Localized Metallopeptidase PGM48 Is a Positive Regulator of Senescence in Arabidopsis thaliana.

Bhuiyan NH, Friso G, Rowland E, Majsec K, van Wijk KJ.

Plant Cell. 2016 Dec;28(12):3020-3037. doi: 10.1105/tpc.16.00745. Epub 2016 Nov 28.

6.

Phosphorylation of plastoglobular proteins in Arabidopsis thaliana.

Lohscheider JN, Friso G, van Wijk KJ.

J Exp Bot. 2016 Jun;67(13):3975-84. doi: 10.1093/jxb/erw091. Epub 2016 Mar 9.

7.

Posttranslational Control of ALA Synthesis Includes GluTR Degradation by Clp Protease and Stabilization by GluTR-Binding Protein.

Apitz J, Nishimura K, Schmied J, Wolf A, Hedtke B, van Wijk KJ, Grimm B.

Plant Physiol. 2016 Apr;170(4):2040-51. doi: 10.1104/pp.15.01945. Epub 2016 Feb 16.

8.

Discovery of a Unique Clp Component, ClpF, in Chloroplasts: A Proposed Binary ClpF-ClpS1 Adaptor Complex Functions in Substrate Recognition and Delivery.

Nishimura K, Apitz J, Friso G, Kim J, Ponnala L, Grimm B, van Wijk KJ.

Plant Cell. 2015 Oct;27(10):2677-91. doi: 10.1105/tpc.15.00574. Epub 2015 Sep 29.

9.

The Arabidopsis Chloroplast Stromal N-Terminome: Complexities of Amino-Terminal Protein Maturation and Stability.

Rowland E, Kim J, Bhuiyan NH, van Wijk KJ.

Plant Physiol. 2015 Nov;169(3):1881-96. doi: 10.1104/pp.15.01214. Epub 2015 Sep 14.

10.

Posttranslational Protein Modifications in Plant Metabolism.

Friso G, van Wijk KJ.

Plant Physiol. 2015 Nov;169(3):1469-87. doi: 10.1104/pp.15.01378. Epub 2015 Sep 3.

11.

Redesigning photosynthesis to sustainably meet global food and bioenergy demand.

Ort DR, Merchant SS, Alric J, Barkan A, Blankenship RE, Bock R, Croce R, Hanson MR, Hibberd JM, Long SP, Moore TA, Moroney J, Niyogi KK, Parry MA, Peralta-Yahya PP, Prince RC, Redding KE, Spalding MH, van Wijk KJ, Vermaas WF, von Caemmerer S, Weber AP, Yeates TO, Yuan JS, Zhu XG.

Proc Natl Acad Sci U S A. 2015 Jul 14;112(28):8529-36. doi: 10.1073/pnas.1424031112. Epub 2015 Jun 29.

12.

Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts.

Kim J, Kimber MS, Nishimura K, Friso G, Schultz L, Ponnala L, van Wijk KJ.

Plant Cell. 2015 May;27(5):1477-96. doi: 10.1105/tpc.15.00106. Epub 2015 Apr 28.

13.

Developmental and Subcellular Organization of Single-Cell C₄ Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing.

Offermann S, Friso G, Doroshenk KA, Sun Q, Sharpe RM, Okita TW, Wimmer D, Edwards GE, van Wijk KJ.

J Proteome Res. 2015 May 1;14(5):2090-108. doi: 10.1021/pr5011907. Epub 2015 Apr 9.

PMID:
25772754
14.

Identification of multiple salicylic acid-binding proteins using two high throughput screens.

Manohar M, Tian M, Moreau M, Park SW, Choi HW, Fei Z, Friso G, Asif M, Manosalva P, von Dahl CC, Shi K, Ma S, Dinesh-Kumar SP, O'Doherty I, Schroeder FC, van Wijk KJ, Klessig DF.

Front Plant Sci. 2015 Jan 12;5:777. doi: 10.3389/fpls.2014.00777. eCollection 2014.

15.

MET1 is a thylakoid-associated TPR protein involved in photosystem II supercomplex formation and repair in Arabidopsis.

Bhuiyan NH, Friso G, Poliakov A, Ponnala L, van Wijk KJ.

Plant Cell. 2015 Jan;27(1):262-85. doi: 10.1105/tpc.114.132787. Epub 2015 Jan 13.

16.

Salicylic Acid Inhibits the Replication of Tomato bushy stunt virus by Directly Targeting a Host Component in the Replication Complex.

Tian M, Sasvari Z, Gonzalez PA, Friso G, Rowland E, Liu XM, van Wijk KJ, Nagy PD, Klessig DF.

Mol Plant Microbe Interact. 2015 Apr;28(4):379-86. doi: 10.1094/MPMI-09-14-0259-R.

17.

Protein maturation and proteolysis in plant plastids, mitochondria, and peroxisomes.

van Wijk KJ.

Annu Rev Plant Biol. 2015;66:75-111. doi: 10.1146/annurev-arplant-043014-115547. Epub 2015 Jan 12. Review.

PMID:
25580835
18.

Organization, function and substrates of the essential Clp protease system in plastids.

Nishimura K, van Wijk KJ.

Biochim Biophys Acta. 2015 Sep;1847(9):915-30. doi: 10.1016/j.bbabio.2014.11.012. Epub 2014 Dec 5. Review.

19.

The Clp protease system is required for copper ion-dependent turnover of the PAA2/HMA8 copper transporter in chloroplasts.

Tapken W, Kim J, Nishimura K, van Wijk KJ, Pilon M.

New Phytol. 2015 Jan;205(2):511-7. doi: 10.1111/nph.13093. Epub 2014 Sep 29.

20.

Matching the supply of bacterial nutrients to the nutritional demand of the animal host.

Russell CW, Poliakov A, Haribal M, Jander G, van Wijk KJ, Douglas AE.

Proc Biol Sci. 2014 Sep 22;281(1791):20141163. doi: 10.1098/rspb.2014.1163.

21.

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

van Wijk KJ, Friso G, Walther D, Schulze WX.

Plant Cell. 2014 Jun;26(6):2367-2389. Epub 2014 Jun 3.

22.

Correlation of mRNA and protein abundance in the developing maize leaf.

Ponnala L, Wang Y, Sun Q, van Wijk KJ.

Plant J. 2014 May;78(3):424-40. doi: 10.1111/tpj.12482. Epub 2014 Apr 2.

23.

ClpS1 is a conserved substrate selector for the chloroplast Clp protease system in Arabidopsis.

Nishimura K, Asakura Y, Friso G, Kim J, Oh SH, Rutschow H, Ponnala L, van Wijk KJ.

Plant Cell. 2013 Jun;25(6):2276-301. doi: 10.1105/tpc.113.112557. Epub 2013 Jun 28.

24.

Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.

Lundquist PK, Poliakov A, Giacomelli L, Friso G, Appel M, McQuinn RP, Krasnoff SB, Rowland E, Ponnala L, Sun Q, van Wijk KJ.

Plant Cell. 2013 May;25(5):1818-39. doi: 10.1105/tpc.113.111120. Epub 2013 May 14.

25.

Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis.

Kim J, Olinares PD, Oh SH, Ghisaura S, Poliakov A, Ponnala L, van Wijk KJ.

Plant Physiol. 2013 May;162(1):157-79. doi: 10.1104/pp.113.215699. Epub 2013 Apr 2.

26.

Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.

Huang M, Friso G, Nishimura K, Qu X, Olinares PD, Majeran W, Sun Q, van Wijk KJ.

J Proteome Res. 2013 Jan 4;12(1):491-504. doi: 10.1021/pr300952g. Epub 2012 Dec 12.

PMID:
23198870
27.

The combined use of photoaffinity labeling and surface plasmon resonance-based technology identifies multiple salicylic acid-binding proteins.

Tian M, von Dahl CC, Liu PP, Friso G, van Wijk KJ, Klessig DF.

Plant J. 2012 Dec;72(6):1027-38. doi: 10.1111/tpj.12016. Epub 2012 Oct 22.

28.

The purification of the Chlamydomonas reinhardtii chloroplast ClpP complex: additional subunits and structural features.

Derrien B, Majeran W, Effantin G, Ebenezer J, Friso G, van Wijk KJ, Steven AC, Maurizi MR, Vallon O.

Plant Mol Biol. 2012 Sep;80(2):189-202. doi: 10.1007/s11103-012-9939-5. Epub 2012 Jul 8.

29.

ABC1K atypical kinases in plants: filling the organellar kinase void.

Lundquist PK, Davis JI, van Wijk KJ.

Trends Plant Sci. 2012 Sep;17(9):546-55. doi: 10.1016/j.tplants.2012.05.010. Epub 2012 Jun 11. Review.

30.

Chloroplast RH3 DEAD box RNA helicases in maize and Arabidopsis function in splicing of specific group II introns and affect chloroplast ribosome biogenesis.

Asakura Y, Galarneau E, Watkins KP, Barkan A, van Wijk KJ.

Plant Physiol. 2012 Jul;159(3):961-74. doi: 10.1104/pp.112.197525. Epub 2012 May 10.

31.

RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing.

Bentolila S, Heller WP, Sun T, Babina AM, Friso G, van Wijk KJ, Hanson MR.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):E1453-61. doi: 10.1073/pnas.1121465109. Epub 2012 May 7.

32.

The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis.

Lundquist PK, Poliakov A, Bhuiyan NH, Zybailov B, Sun Q, van Wijk KJ.

Plant Physiol. 2012 Mar;158(3):1172-92. doi: 10.1104/pp.111.193144. Epub 2012 Jan 24.

33.

Nucleoid-enriched proteomes in developing plastids and chloroplasts from maize leaves: a new conceptual framework for nucleoid functions.

Majeran W, Friso G, Asakura Y, Qu X, Huang M, Ponnala L, Watkins KP, Barkan A, van Wijk KJ.

Plant Physiol. 2012 Jan;158(1):156-89. doi: 10.1104/pp.111.188474. Epub 2011 Nov 7.

34.
35.

Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis.

Olinares PD, Kim J, Davis JI, van Wijk KJ.

Plant Cell. 2011 Jun;23(6):2348-61. doi: 10.1105/tpc.111.086454. Epub 2011 Jun 28.

36.

Characterization of the consequences of YidC depletion on the inner membrane proteome of E. coli using 2D blue native/SDS-PAGE.

Wickström D, Wagner S, Simonsson P, Pop O, Baars L, Ytterberg AJ, van Wijk KJ, Luirink J, de Gier JW.

J Mol Biol. 2011 Jun 3;409(2):124-35. doi: 10.1016/j.jmb.2011.03.068. Epub 2011 Apr 8.

PMID:
21497606
37.

Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO).

Agrawal GK, Job D, Zivy M, Agrawal VP, Bradshaw RA, Dunn MJ, Haynes PA, van Wijk KJ, Kikuchi S, Renaut J, Weckwerth W, Rakwal R.

Proteomics. 2011 May;11(9):1559-68. doi: 10.1002/pmic.201000608. Epub 2011 Mar 23.

PMID:
21433283
38.

The role of transitory starch in C(3), CAM, and C(4) metabolism and opportunities for engineering leaf starch accumulation.

Weise SE, van Wijk KJ, Sharkey TD.

J Exp Bot. 2011 May;62(9):3109-18. doi: 10.1093/jxb/err035. Epub 2011 Mar 23. Review.

PMID:
21430293
39.

APO1 promotes the splicing of chloroplast group II introns and harbors a plant-specific zinc-dependent RNA binding domain.

Watkins KP, Rojas M, Friso G, van Wijk KJ, Meurer J, Barkan A.

Plant Cell. 2011 Mar;23(3):1082-92. doi: 10.1105/tpc.111.084335. Epub 2011 Mar 18.

40.

Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis.

Poliakov A, Russell CW, Ponnala L, Hoops HJ, Sun Q, Douglas AE, van Wijk KJ.

Mol Cell Proteomics. 2011 Jun;10(6):M110.007039. doi: 10.1074/mcp.M110.007039. Epub 2011 Mar 18.

41.

Plastid proteomics in higher plants: current state and future goals.

van Wijk KJ, Baginsky S.

Plant Physiol. 2011 Apr;155(4):1578-88. doi: 10.1104/pp.111.172932. Epub 2011 Feb 24. Review. No abstract available.

42.

The Clp protease system; a central component of the chloroplast protease network.

Olinares PD, Kim J, van Wijk KJ.

Biochim Biophys Acta. 2011 Aug;1807(8):999-1011. doi: 10.1016/j.bbabio.2010.12.003. Epub 2010 Dec 15. Review.

43.

Structural and metabolic transitions of C4 leaf development and differentiation defined by microscopy and quantitative proteomics in maize.

Majeran W, Friso G, Ponnala L, Connolly B, Huang M, Reidel E, Zhang C, Asakura Y, Bhuiyan NH, Sun Q, Turgeon R, van Wijk KJ.

Plant Cell. 2010 Nov;22(11):3509-42. doi: 10.1105/tpc.110.079764. Epub 2010 Nov 16.

44.

MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data.

Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, Nakagami H, Jones AM, Briggs SP, Castleden I, Tanz SK, Millar AH, Heazlewood JL.

Plant Physiol. 2011 Jan;155(1):259-70. doi: 10.1104/pp.110.168195. Epub 2010 Nov 12.

45.

Consequences of depletion of the signal recognition particle in Escherichia coli.

Wickström D, Wagner S, Baars L, Ytterberg AJ, Klepsch M, van Wijk KJ, Luirink J, de Gier JW.

J Biol Chem. 2011 Feb 11;286(6):4598-609. doi: 10.1074/jbc.M109.081935. Epub 2010 Oct 5.

46.

Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Olinares PD, Ponnala L, van Wijk KJ.

Mol Cell Proteomics. 2010 Jul;9(7):1594-615. doi: 10.1074/mcp.M000038-MCP201. Epub 2010 Apr 26.

47.
49.

Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis.

Kim J, Rudella A, Ramirez Rodriguez V, Zybailov B, Olinares PD, van Wijk KJ.

Plant Cell. 2009 Jun;21(6):1669-92. doi: 10.1105/tpc.108.063784. Epub 2009 Jun 12.

50.

Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

Zybailov B, Friso G, Kim J, Rudella A, Rodríguez VR, Asakura Y, Sun Q, van Wijk KJ.

Mol Cell Proteomics. 2009 Aug;8(8):1789-1810. doi: 10.1074/mcp.M900104-MCP200.

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