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Items: 1 to 50 of 90

1.

High-Level Abundances of Methanobacteriales and Syntrophobacterales May Help To Prevent Corrosion of Metal Sheet Piles.

In 't Zandt MH, Kip N, Frank J, Jansen S, van Veen JA, Jetten MSM, Welte CU.

Appl Environ Microbiol. 2019 Oct 1;85(20). pii: e01369-19. doi: 10.1128/AEM.01369-19. Print 2019 Oct 15.

PMID:
31420342
2.

Nitrification inhibitors effectively target N2 O-producing Nitrosospira spp. in tropical soil.

Cassman NA, Soares JR, Pijl A, Lourenço KS, van Veen JA, Cantarella H, Kuramae EE.

Environ Microbiol. 2019 Apr;21(4):1241-1254. doi: 10.1111/1462-2920.14557. Epub 2019 Mar 14.

3.

Moisture Is More Important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland.

Lupatini M, Suleiman AKA, Jacques RJS, Lemos LN, Pylro VS, Van Veen JA, Kuramae EE, Roesch LFW.

Microb Ecol. 2019 Feb;77(2):460-470. doi: 10.1007/s00248-018-1310-1. Epub 2019 Jan 3.

PMID:
30607437
4.

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion.

Lourenço KS, Suleiman AKA, Pijl A, van Veen JA, Cantarella H, Kuramae EE.

Microbiome. 2018 Aug 13;6(1):142. doi: 10.1186/s40168-018-0525-1.

5.

Effect of Burkholderia tropica and Herbaspirillum frisingense strains on sorghum growth is plant genotype dependent.

Schlemper TR, Dimitrov MR, Silva Gutierrez FAO, van Veen JA, Silveira APD, Kuramae EE.

PeerJ. 2018 Jul 24;6:e5346. doi: 10.7717/peerj.5346. eCollection 2018.

6.

Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop.

Lourenço KS, Cassman NA, Pijl AS, van Veen JA, Cantarella H, Kuramae EE.

Front Microbiol. 2018 Apr 10;9:674. doi: 10.3389/fmicb.2018.00674. eCollection 2018.

7.

Co-Variation of Bacterial and Fungal Communities in Different Sorghum Cultivars and Growth Stages is Soil Dependent.

Schlemper TR, van Veen JA, Kuramae EE.

Microb Ecol. 2018 Jul;76(1):205-214. doi: 10.1007/s00248-017-1108-6. Epub 2017 Nov 16.

8.

Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils.

Schlemper TR, Leite MFA, Lucheta AR, Shimels M, Bouwmeester HJ, van Veen JA, Kuramae EE.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix096.

PMID:
28830071
9.

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture.

Hannula SE, Morriën E, de Hollander M, van der Putten WH, van Veen JA, de Boer W.

ISME J. 2017 Oct;11(10):2294-2304. doi: 10.1038/ismej.2017.90. Epub 2017 Jun 6.

10.

Soil networks become more connected and take up more carbon as nature restoration progresses.

Morriën E, Hannula SE, Snoek LB, Helmsing NR, Zweers H, de Hollander M, Soto RL, Bouffaud ML, Buée M, Dimmers W, Duyts H, Geisen S, Girlanda M, Griffiths RI, Jørgensen HB, Jensen J, Plassart P, Redecker D, Schmelz RM, Schmidt O, Thomson BC, Tisserant E, Uroz S, Winding A, Bailey MJ, Bonkowski M, Faber JH, Martin F, Lemanceau P, de Boer W, van Veen JA, van der Putten WH.

Nat Commun. 2017 Feb 8;8:14349. doi: 10.1038/ncomms14349.

11.

Successive DNA extractions improve characterization of soil microbial communities.

Dimitrov MR, Veraart AJ, de Hollander M, Smidt H, van Veen JA, Kuramae EE.

PeerJ. 2017 Feb 1;5:e2915. doi: 10.7717/peerj.2915. eCollection 2017.

12.

Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications.

Kielak AM, Castellane TC, Campanharo JC, Colnago LA, Costa OY, Corradi da Silva ML, van Veen JA, Lemos EG, Kuramae EE.

Sci Rep. 2017 Jan 24;7:41193. doi: 10.1038/srep41193.

13.

Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils.

Hannula SE, van Veen JA.

Front Microbiol. 2016 Nov 29;7:1897. eCollection 2016.

14.

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere.

Yan Y, Kuramae EE, de Hollander M, Klinkhamer PG, van Veen JA.

ISME J. 2017 Jan;11(1):56-66. doi: 10.1038/ismej.2016.108. Epub 2016 Aug 2.

15.

The Ecology of Acidobacteria: Moving beyond Genes and Genomes.

Kielak AM, Barreto CC, Kowalchuk GA, van Veen JA, Kuramae EE.

Front Microbiol. 2016 May 31;7:744. doi: 10.3389/fmicb.2016.00744. eCollection 2016. Review.

16.

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland.

Cassman NA, Leite MF, Pan Y, de Hollander M, van Veen JA, Kuramae EE.

Sci Rep. 2016 Mar 29;6:23680. doi: 10.1038/srep23680.

17.

Bacterial Community Succession in Pine-Wood Decomposition.

Kielak AM, Scheublin TR, Mendes LW, van Veen JA, Kuramae EE.

Front Microbiol. 2016 Mar 1;7:231. doi: 10.3389/fmicb.2016.00231. eCollection 2016.

18.

Methods for Baiting and Enriching Fungus-Feeding (Mycophagous) Rhizosphere Bacteria.

Ballhausen MB, van Veen JA, Hundscheid MP, de Boer W.

Front Microbiol. 2015 Dec 22;6:1416. doi: 10.3389/fmicb.2015.01416. eCollection 2015.

19.

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas.

Song C, Schmidt R, de Jager V, Krzyzanowska D, Jongedijk E, Cankar K, Beekwilder J, van Veen A, de Boer W, van Veen JA, Garbeva P.

BMC Genomics. 2015 Dec 24;16:1103. doi: 10.1186/s12864-015-2289-3.

20.

Antifungal Rhizosphere Bacteria Can increase as Response to the Presence of Saprotrophic Fungi.

de Boer W, Hundscheid MP, Klein Gunnewiek PJ, de Ridder-Duine AS, Thion C, van Veen JA, van der Wal A.

PLoS One. 2015 Sep 22;10(9):e0137988. doi: 10.1371/journal.pone.0137988. eCollection 2015.

21.

Verrucomicrobial community structure and abundance as indicators for changes in chemical factors linked to soil fertility.

Navarrete AA, Soares T, Rossetto R, van Veen JA, Tsai SM, Kuramae EE.

Antonie Van Leeuwenhoek. 2015 Sep;108(3):741-52. doi: 10.1007/s10482-015-0530-3. Epub 2015 Jul 17.

22.

Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems.

Yan Y, Kuramae EE, Klinkhamer PG, van Veen JA.

Appl Environ Microbiol. 2015 Jul;81(13):4246-52. doi: 10.1128/AEM.00958-15. Epub 2015 Apr 17.

23.

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas?

Rudnick MB, van Veen JA, de Boer W.

Environ Microbiol Rep. 2015 Oct;7(5):709-14. doi: 10.1111/1758-2229.12290. Epub 2015 Jun 10.

PMID:
25858310
24.

Soil microbiome responses to the short-term effects of Amazonian deforestation.

Navarrete AA, Tsai SM, Mendes LW, Faust K, de Hollander M, Cassman NA, Raes J, van Veen JA, Kuramae EE.

Mol Ecol. 2015 May;24(10):2433-48. doi: 10.1111/mec.13172. Epub 2015 Apr 21.

PMID:
25809788
25.

Soil-borne microbiome: linking diversity to function.

Mendes LW, Tsai SM, Navarrete AA, de Hollander M, van Veen JA, Kuramae EE.

Microb Ecol. 2015 Jul;70(1):255-65. doi: 10.1007/s00248-014-0559-2. Epub 2015 Jan 14.

PMID:
25586384
26.

Impact of interspecific interactions on antimicrobial activity among soil bacteria.

Tyc O, van den Berg M, Gerards S, van Veen JA, Raaijmakers JM, de Boer W, Garbeva P.

Front Microbiol. 2014 Oct 28;5:567. doi: 10.3389/fmicb.2014.00567. eCollection 2014.

27.

The dual role of microbes in corrosion.

Kip N, van Veen JA.

ISME J. 2015 Mar;9(3):542-51. doi: 10.1038/ismej.2014.169. Epub 2014 Sep 26. Review.

28.

Soil-borne microbial functional structure across different land uses.

Kuramae EE, Zhou JZ, Kowalchuk GA, van Veen JA.

ScientificWorldJournal. 2014;2014:216071. doi: 10.1155/2014/216071. Epub 2014 Aug 10.

29.

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil.

Pan Y, Cassman N, de Hollander M, Mendes LW, Korevaar H, Geerts RH, van Veen JA, Kuramae EE.

FEMS Microbiol Ecol. 2014 Oct;90(1):195-205. doi: 10.1111/1574-6941.12384. Epub 2014 Aug 21.

30.

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria.

Bai Y, Eijsink VG, Kielak AM, van Veen JA, de Boer W.

Environ Microbiol. 2016 Jan;18(1):38-49. doi: 10.1111/1462-2920.12545. Epub 2014 Jul 15.

PMID:
24947206
31.

Biosynthetic genes and activity spectrum of antifungal polyynes from Collimonas fungivorans Ter331.

Fritsche K, van den Berg M, de Boer W, van Beek TA, Raaijmakers JM, van Veen JA, Leveau JH.

Environ Microbiol. 2014 May;16(5):1334-45. doi: 10.1111/1462-2920.12440. Epub 2014 Mar 27.

PMID:
24588891
32.

Taxonomical and functional microbial community selection in soybean rhizosphere.

Mendes LW, Kuramae EE, Navarrete AA, van Veen JA, Tsai SM.

ISME J. 2014 Aug;8(8):1577-87. doi: 10.1038/ismej.2014.17. Epub 2014 Feb 20.

33.

Comparative genomics of bacteria from the genus Collimonas: linking (dis)similarities in gene content to phenotypic variation and conservation.

Mela F, Fritsche K, de Boer W, van den Berg M, van Veen JA, Maharaj NN, Leveau JH.

Environ Microbiol Rep. 2012 Aug;4(4):424-32. doi: 10.1111/j.1758-2229.2012.00336.x. Epub 2012 Mar 19.

PMID:
23760828
34.

Soil microbial diversity patterns of a lowland spring environment.

Vasileiadis S, Puglisi E, Arena M, Cappa F, van Veen JA, Cocconcelli PS, Trevisan M.

FEMS Microbiol Ecol. 2013 Nov;86(2):172-84. doi: 10.1111/1574-6941.12150. Epub 2013 Jun 19.

35.

Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics.

Drigo B, Kowalchuk GA, Knapp BA, Pijl AS, Boschker HT, van Veen JA.

Glob Chang Biol. 2013 Feb;19(2):621-36. doi: 10.1111/gcb.12045. Epub 2012 Nov 7.

PMID:
23504797
36.

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils.

Navarrete AA, Kuramae EE, de Hollander M, Pijl AS, van Veen JA, Tsai SM.

FEMS Microbiol Ecol. 2013 Mar;83(3):607-21. doi: 10.1111/1574-6941.12018. Epub 2012 Oct 19.

37.

13C pulse-labeling assessment of the community structure of active fungi in the rhizosphere of a genetically starch-modified potato (Solanum tuberosum) cultivar and its parental isoline.

Hannula SE, Boschker HT, de Boer W, van Veen JA.

New Phytol. 2012 May;194(3):784-99. doi: 10.1111/j.1469-8137.2012.04089.x. Epub 2012 Mar 13.

38.

Soil characteristics more strongly influence soil bacterial communities than land-use type.

Kuramae EE, Yergeau E, Wong LC, Pijl AS, van Veen JA, Kowalchuk GA.

FEMS Microbiol Ecol. 2012 Jan;79(1):12-24. doi: 10.1111/j.1574-6941.2011.01192.x.

39.

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger.

Mela F, Fritsche K, de Boer W, van Veen JA, de Graaff LH, van den Berg M, Leveau JH.

ISME J. 2011 Sep;5(9):1494-504. doi: 10.1038/ismej.2011.29. Epub 2011 May 26.

40.

Defensive properties of pyrrolizidine alkaloids against microorganisms.

Joosten L, van Veen JA.

Phytochem Rev. 2011 Mar;10(1):127-136. Epub 2010 Nov 23.

41.

The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris.

Joosten L, Cheng D, Mulder PP, Vrieling K, van Veen JA, Klinkhamer PG.

Phytochemistry. 2011 Feb;72(2-3):214-22. doi: 10.1016/j.phytochem.2010.11.013. Epub 2010 Dec 13.

PMID:
21159354
42.

Downward vascular translocation of a green fluorescent protein-tagged strain of Dickeya sp. (Biovar 3) from stem and leaf inoculation sites on potato.

Czajkowski R, de Boer WJ, van Veen JA, van der Wolf JM.

Phytopathology. 2010 Nov;100(11):1128-37. doi: 10.1094/PHYTO-03-10-0093.

43.

Comparative analysis of acidobacterial genomic fragments from terrestrial and aquatic metagenomic libraries, with emphasis on acidobacteria subdivision 6.

Kielak AM, van Veen JA, Kowalchuk GA.

Appl Environ Microbiol. 2010 Oct;76(20):6769-77. doi: 10.1128/AEM.00343-10. Epub 2010 Aug 20.

44.

Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2.

Drigo B, Pijl AS, Duyts H, Kielak AM, Gamper HA, Houtekamer MJ, Boschker HT, Bodelier PL, Whiteley AS, van Veen JA, Kowalchuk GA.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10938-42. doi: 10.1073/pnas.0912421107. Epub 2010 Jun 1.

45.

Brønsted acid sites of zeolitic strength in amorphous silica-alumina.

Poduval DG, van Veen JA, Rigutto MS, Hensen EJ.

Chem Commun (Camb). 2010 May 28;46(20):3466-8. doi: 10.1039/c000019a. Epub 2010 Apr 21.

PMID:
20407684
46.

Microbial secondary succession in a chronosequence of chalk grasslands.

Kuramae EE, Gamper HA, Yergeau E, Piceno YM, Brodie EL, Desantis TZ, Andersen GL, van Veen JA, Kowalchuk GA.

ISME J. 2010 May;4(5):711-5. doi: 10.1038/ismej.2010.11. Epub 2010 Feb 18.

PMID:
20164861
47.

Reduction of rare soil microbes modifies plant-herbivore interactions.

Hol WH, de Boer W, Termorshuizen AJ, Meyer KM, Schneider JH, van Dam NM, van Veen JA, van der Putten WH.

Ecol Lett. 2010 Mar;13(3):292-301. doi: 10.1111/j.1461-0248.2009.01424.x. Epub 2010 Jan 11.

PMID:
20070364
48.

The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods.

Joosten L, Mulder PP, Vrieling K, van Veen JA, Klinkhamer PG.

Phytochem Anal. 2010 Mar-Apr;21(2):197-204. doi: 10.1002/pca.1183.

PMID:
19908215
49.

Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil.

Kielak A, Rodrigues JL, Kuramae EE, Chain PS, van Veen JA, Kowalchuk GA.

FEMS Microbiol Ecol. 2010 Jan;71(1):23-33. doi: 10.1111/j.1574-6941.2009.00785.x.

50.

Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO(2).

Drigo B, van Veen JA, Kowalchuk GA.

ISME J. 2009 Oct;3(10):1204-17. doi: 10.1038/ismej.2009.65. Epub 2009 Jun 18.

PMID:
19536195

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