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Items: 1 to 50 of 102

1.

The large fraction of heterochromatin in Drosophila neurons is bound by both B-type lamin and HP1a.

Pindyurin AV, Ilyin AA, Ivankin AV, Tselebrovsky MV, Nenasheva VV, Mikhaleva EA, Pagie L, van Steensel B, Shevelyov YY.

Epigenetics Chromatin. 2018 Nov 1;11(1):65. doi: 10.1186/s13072-018-0235-8.

2.

Scientific honesty and publicly shared lab notebooks: Sharing lab notebooks along with publication would increase transparency and help to improve honesty when reporting results.

van Steensel B.

EMBO Rep. 2018 Oct;19(10). pii: e46866. doi: 10.15252/embr.201846866. Epub 2018 Aug 29. No abstract available.

PMID:
30158143
3.

Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.

Chen Y, Zhang Y, Wang Y, Zhang L, Brinkman EK, Adam SA, Goldman R, van Steensel B, Ma J, Belmont AS.

J Cell Biol. 2018 Nov 5;217(11):4025-4048. doi: 10.1083/jcb.201807108. Epub 2018 Aug 28.

PMID:
30154186
4.

Correction to: DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.

La Fortezza M, Grigolon G, Cosolo A, Pindyurin A, Breimann L, Blum H, van Steensel B, Classen AK.

Epigenetics Chromatin. 2018 Jul 3;11(1):38. doi: 10.1186/s13072-018-0206-0.

5.

DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis.

La Fortezza M, Grigolon G, Cosolo A, Pindyurin A, Breimann L, Blum H, van Steensel B, Classen AK.

Epigenetics Chromatin. 2018 Jun 5;11(1):27. doi: 10.1186/s13072-018-0196-y. Erratum in: Epigenetics Chromatin. 2018 Jul 3;11(1):38.

6.

Kinetics and Fidelity of the Repair of Cas9-Induced Double-Strand DNA Breaks.

Brinkman EK, Chen T, de Haas M, Holland HA, Akhtar W, van Steensel B.

Mol Cell. 2018 Jun 7;70(5):801-813.e6. doi: 10.1016/j.molcel.2018.04.016. Epub 2018 May 24.

7.

Easy quantification of template-directed CRISPR/Cas9 editing.

Brinkman EK, Kousholt AN, Harmsen T, Leemans C, Chen T, Jonkers J, van Steensel B.

Nucleic Acids Res. 2018 Jun 1;46(10):e58. doi: 10.1093/nar/gky164.

8.

Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence.

Lenain C, de Graaf CA, Pagie L, Visser NL, de Haas M, de Vries SS, Peric-Hupkes D, van Steensel B, Peeper DS.

Genome Res. 2017 Oct;27(10):1634-1644. doi: 10.1101/gr.225763.117. Epub 2017 Sep 15.

9.

Comprehensive analysis of nucleocytoplasmic dynamics of mRNA in Drosophila cells.

Chen T, van Steensel B.

PLoS Genet. 2017 Aug 3;13(8):e1006929. doi: 10.1371/journal.pgen.1006929. eCollection 2017 Aug.

10.

Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.

van Steensel B, Belmont AS.

Cell. 2017 May 18;169(5):780-791. doi: 10.1016/j.cell.2017.04.022. Review.

11.

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension.

Haarhuis JHI, van der Weide RH, Blomen VA, Yáñez-Cuna JO, Amendola M, van Ruiten MS, Krijger PHL, Teunissen H, Medema RH, van Steensel B, Brummelkamp TR, de Wit E, Rowland BD.

Cell. 2017 May 4;169(4):693-707.e14. doi: 10.1016/j.cell.2017.04.013.

12.

Functional Enhancer Screening in Single Cells.

van Arensbergen J, van Steensel B.

Mol Cell. 2017 Apr 20;66(2):167-168. doi: 10.1016/j.molcel.2017.03.018.

13.

Clustering of Drosophila housekeeping promoters facilitates their expression.

Corrales M, Rosado A, Cortini R, van Arensbergen J, van Steensel B, Filion GJ.

Genome Res. 2017 Jul;27(7):1153-1161. doi: 10.1101/gr.211433.116. Epub 2017 Apr 18.

14.

Small chromosomal regions position themselves autonomously according to their chromatin class.

van de Werken HJG, Haan JC, Feodorova Y, Bijos D, Weuts A, Theunis K, Holwerda SJB, Meuleman W, Pagie L, Thanisch K, Kumar P, Leonhardt H, Marynen P, van Steensel B, Voet T, de Laat W, Solovei I, Joffe B.

Genome Res. 2017 Jun;27(6):922-933. doi: 10.1101/gr.213751.116. Epub 2017 Mar 24.

15.

Genome-nuclear lamina interactions: from cell populations to single cells.

Yáñez-Cuna JO, van Steensel B.

Curr Opin Genet Dev. 2017 Apr;43:67-72. doi: 10.1016/j.gde.2016.12.005. Epub 2017 Jan 17. Review.

16.

Genome-wide mapping of autonomous promoter activity in human cells.

van Arensbergen J, FitzPatrick VD, de Haas M, Pagie L, Sluimer J, Bussemaker HJ, van Steensel B.

Nat Biotechnol. 2017 Feb;35(2):145-153. doi: 10.1038/nbt.3754. Epub 2016 Dec 26.

17.

High-throughput assessment of context-dependent effects of chromatin proteins.

Brueckner L, van Arensbergen J, Akhtar W, Pagie L, van Steensel B.

Epigenetics Chromatin. 2016 Oct 18;9:43. eCollection 2016.

18.

A single double-strand break system reveals repair dynamics and mechanisms in heterochromatin and euchromatin.

Janssen A, Breuer GA, Brinkman EK, van der Meulen AI, Borden SV, van Steensel B, Bindra RS, LaRocque JR, Karpen GH.

Genes Dev. 2016 Jul 15;30(14):1645-57. doi: 10.1101/gad.283028.116.

19.

Inducible DamID systems for genomic mapping of chromatin proteins in Drosophila.

Pindyurin AV, Pagie L, Kozhevnikova EN, van Arensbergen J, van Steensel B.

Nucleic Acids Res. 2016 Jul 8;44(12):5646-57. doi: 10.1093/nar/gkw176. Epub 2016 Mar 21.

20.

Corrigendum: Domains of genome-wide gene expression dysregulation in Down's syndrome.

Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, Falconnet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE.

Nature. 2016 Mar 17;531(7594):400. doi: 10.1038/nature16135. Epub 2015 Dec 2. No abstract available.

PMID:
26633627
21.

Genome-wide maps of nuclear lamina interactions in single human cells.

Kind J, Pagie L, de Vries SS, Nahidiazar L, Dey SS, Bienko M, Zhan Y, Lajoie B, de Graaf CA, Amendola M, Fudenberg G, Imakaev M, Mirny LA, Jalink K, Dekker J, van Oudenaarden A, van Steensel B.

Cell. 2015 Sep 24;163(1):134-47. doi: 10.1016/j.cell.2015.08.040. Epub 2015 Sep 10.

22.

GENE REGULATION. A HUSH for transgene expression.

Brummelkamp TR, van Steensel B.

Science. 2015 Jun 26;348(6242):1433-4. doi: 10.1126/science.aac6529. No abstract available.

PMID:
26113708
23.

Corrigendum: using TRIP for genome-wide position effect analysis in cultured cells.

Akhtar W, Pindyurin AV, de Jong J, Pagie L, Ten Hoeve J, Berns A, Wessels LF, van Steensel B, van Lohuizen M.

Nat Protoc. 2015 Apr;10(4):643. doi: 10.1038/nprot0415-644c. Epub 2015 Mar 26. No abstract available.

PMID:
25811898
24.

Nuclear lamins are not required for lamina-associated domain organization in mouse embryonic stem cells.

Amendola M, van Steensel B.

EMBO Rep. 2015 May;16(5):610-7. doi: 10.15252/embr.201439789. Epub 2015 Mar 17.

25.

A short guide to technology development in cell biology.

van Steensel B.

J Cell Biol. 2015 Mar 16;208(6):655-7. doi: 10.1083/jcb.201502006.

26.

Differential spatial and structural organization of the X chromosome underlies dosage compensation in C. elegans.

Sharma R, Jost D, Kind J, Gómez-Saldivar G, van Steensel B, Askjaer P, Vaillant C, Meister P.

Genes Dev. 2014 Dec 1;28(23):2591-6. doi: 10.1101/gad.248864.114.

27.

Easy quantitative assessment of genome editing by sequence trace decomposition.

Brinkman EK, Chen T, Amendola M, van Steensel B.

Nucleic Acids Res. 2014 Dec 16;42(22):e168. doi: 10.1093/nar/gku936. Epub 2014 Oct 9.

28.

In search of the determinants of enhancer-promoter interaction specificity.

van Arensbergen J, van Steensel B, Bussemaker HJ.

Trends Cell Biol. 2014 Nov;24(11):695-702. doi: 10.1016/j.tcb.2014.07.004. Epub 2014 Aug 24. Review.

29.

Using TRIP for genome-wide position effect analysis in cultured cells.

Akhtar W, Pindyurin AV, de Jong J, Pagie L, Ten Hoeve J, Berns A, Wessels LF, van Steensel B, van Lohuizen M.

Nat Protoc. 2014;9(6):1255-81. doi: 10.1038/nprot.2014.072. Epub 2014 May 8. Erratum in: Nat Protoc. 2015 Apr;10(4):643.

PMID:
24810036
30.

Domains of genome-wide gene expression dysregulation in Down's syndrome.

Letourneau A, Santoni FA, Bonilla X, Sailani MR, Gonzalez D, Kind J, Chevalier C, Thurman R, Sandstrom RS, Hibaoui Y, Garieri M, Popadin K, Falconnet E, Gagnebin M, Gehrig C, Vannier A, Guipponi M, Farinelli L, Robyr D, Migliavacca E, Borel C, Deutsch S, Feki A, Stamatoyannopoulos JA, Herault Y, van Steensel B, Guigo R, Antonarakis SE.

Nature. 2014 Apr 17;508(7496):345-50. doi: 10.1038/nature13200. Erratum in: Nature. 2016 Mar 17;531(7594):400.

PMID:
24740065
31.

Stochastic genome-nuclear lamina interactions: modulating roles of Lamin A and BAF.

Kind J, van Steensel B.

Nucleus. 2014 Mar-Apr;5(2):124-30. doi: 10.4161/nucl.28825. Epub 2014 Apr 9. Review.

32.

Mechanisms and dynamics of nuclear lamina-genome interactions.

Amendola M, van Steensel B.

Curr Opin Cell Biol. 2014 Jun;28:61-8. doi: 10.1016/j.ceb.2014.03.003. Epub 2014 Mar 30. Review.

PMID:
24694724
33.

Chromatin position effects assayed by thousands of reporters integrated in parallel.

Akhtar W, de Jong J, Pindyurin AV, Pagie L, Meuleman W, de Ridder J, Berns A, Wessels LF, van Lohuizen M, van Steensel B.

Cell. 2013 Aug 15;154(4):914-27. doi: 10.1016/j.cell.2013.07.018.

34.

Differential programming of B cells in AID deficient mice.

Hogenbirk MA, Heideman MR, Velds A, van den Berk PC, Kerkhoven RM, van Steensel B, Jacobs H.

PLoS One. 2013 Jul 29;8(7):e69815. doi: 10.1371/journal.pone.0069815. Print 2013.

35.

The genomic landscape of the somatic linker histone subtypes H1.1 to H1.5 in human cells.

Izzo A, Kamieniarz-Gdula K, Ramírez F, Noureen N, Kind J, Manke T, van Steensel B, Schneider R.

Cell Rep. 2013 Jun 27;3(6):2142-54. doi: 10.1016/j.celrep.2013.05.003. Epub 2013 Jun 6.

36.

Single-cell dynamics of genome-nuclear lamina interactions.

Kind J, Pagie L, Ortabozkoyun H, Boyle S, de Vries SS, Janssen H, Amendola M, Nolen LD, Bickmore WA, van Steensel B.

Cell. 2013 Mar 28;153(1):178-92. doi: 10.1016/j.cell.2013.02.028. Epub 2013 Mar 21.

37.

Genome architecture: domain organization of interphase chromosomes.

Bickmore WA, van Steensel B.

Cell. 2013 Mar 14;152(6):1270-84. doi: 10.1016/j.cell.2013.02.001. Review.

38.

A network model of the molecular organization of chromatin in Drosophila.

van Bemmel JG, Filion GJ, Rosado A, Talhout W, de Haas M, van Welsem T, van Leeuwen F, van Steensel B.

Mol Cell. 2013 Feb 21;49(4):759-71. doi: 10.1016/j.molcel.2013.01.040.

39.

Chromatin organization: form to function.

de Graaf CA, van Steensel B.

Curr Opin Genet Dev. 2013 Apr;23(2):185-90. doi: 10.1016/j.gde.2012.11.011. Epub 2012 Dec 26. Review.

PMID:
23274160
40.

Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence.

Meuleman W, Peric-Hupkes D, Kind J, Beaudry JB, Pagie L, Kellis M, Reinders M, Wessels L, van Steensel B.

Genome Res. 2013 Feb;23(2):270-80. doi: 10.1101/gr.141028.112. Epub 2012 Nov 2.

41.

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

van Luenen HG, Farris C, Jan S, Genest PA, Tripathi P, Velds A, Kerkhoven RM, Nieuwland M, Haydock A, Ramasamy G, Vainio S, Heidebrecht T, Perrakis A, Pagie L, van Steensel B, Myler PJ, Borst P.

Cell. 2012 Aug 31;150(5):909-21. doi: 10.1016/j.cell.2012.07.030.

42.

Mapping of lamin A- and progerin-interacting genome regions.

Kubben N, Adriaens M, Meuleman W, Voncken JW, van Steensel B, Misteli T.

Chromosoma. 2012 Oct;121(5):447-64. doi: 10.1007/s00412-012-0376-7. Epub 2012 May 19.

43.

Hox in space: gene cluster regulation linked to folding of chromatin.

Pindyurin AV, van Steensel B.

Nucleus. 2012 Mar 1;3(2):118-22. doi: 10.4161/nucl.19159. Epub 2012 Mar 1.

44.

The inner nuclear membrane proteins Man1 and Ima1 link to two different types of chromatin at the nuclear periphery in S. pombe.

Steglich B, Filion GJ, van Steensel B, Ekwall K.

Nucleus. 2012 Jan-Feb;3(1):77-87.

PMID:
22156748
45.

Chromatin: constructing the big picture.

van Steensel B.

EMBO J. 2011 May 18;30(10):1885-95. doi: 10.1038/emboj.2011.135. Epub 2011 Apr 28. Review.

46.

Interactions among Polycomb domains are guided by chromosome architecture.

Tolhuis B, Blom M, Kerkhoven RM, Pagie L, Teunissen H, Nieuwland M, Simonis M, de Laat W, van Lohuizen M, van Steensel B.

PLoS Genet. 2011 Mar;7(3):e1001343. doi: 10.1371/journal.pgen.1001343. Epub 2011 Mar 24.

47.

Role of the nuclear lamina in genome organization and gene expression.

Peric-Hupkes D, van Steensel B.

Cold Spring Harb Symp Quant Biol. 2010;75:517-24. doi: 10.1101/sqb.2010.75.014. Epub 2011 Jan 5.

PMID:
21209388
48.

The insulator protein SU(HW) fine-tunes nuclear lamina interactions of the Drosophila genome.

van Bemmel JG, Pagie L, Braunschweig U, Brugman W, Meuleman W, Kerkhoven RM, van Steensel B.

PLoS One. 2010 Nov 24;5(11):e15013. doi: 10.1371/journal.pone.0015013.

49.

Genomics tools for unraveling chromosome architecture.

van Steensel B, Dekker J.

Nat Biotechnol. 2010 Oct;28(10):1089-95. doi: 10.1038/nbt.1680.

50.

A direct role for cohesin in gene regulation and ecdysone response in Drosophila salivary glands.

Pauli A, van Bemmel JG, Oliveira RA, Itoh T, Shirahige K, van Steensel B, Nasmyth K.

Curr Biol. 2010 Oct 26;20(20):1787-98. doi: 10.1016/j.cub.2010.09.006. Epub 2010 Oct 7.

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