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Items: 1 to 50 of 378

1.

The impact of human-facilitated selection on the gut microbiota of domesticated mammals.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz121. doi: 10.1093/femsec/fiz121.

PMID:
31344227
2.

Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions.

Hayes S, Mahony J, Vincentelli R, Ramond L, Nauta A, van Sinderen D, Cambillau C.

Viruses. 2019 Jul 9;11(7). pii: E631. doi: 10.3390/v11070631.

3.

Implementation of Transposon Mutagenesis in Bifidobacterium.

Ruiz L, van Sinderen D.

Methods Mol Biol. 2019;2016:51-62. doi: 10.1007/978-1-4939-9570-7_5.

PMID:
31197708
4.

Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution.

Duranti S, Lugli GA, Milani C, James K, Mancabelli L, Turroni F, Alessandri G, Mangifesta M, Mancino W, Ossiprandi MC, Iori A, Rota C, Gargano G, Bernasconi S, Di Pierro F, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Jun 6. doi: 10.1111/1462-2920.14705. [Epub ahead of print]

PMID:
31172651
5.

Comparative genome analysis of the Lactobacillus brevis species.

Feyereisen M, Mahony J, Kelleher P, Roberts RJ, O'Sullivan T, Geertman JA, van Sinderen D.

BMC Genomics. 2019 May 23;20(1):416. doi: 10.1186/s12864-019-5783-1.

6.

Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches.

Lugli GA, Milani C, Duranti S, Alessandri G, Turroni F, Mancabelli L, Tatoni D, Ossiprandi MC, van Sinderen D, Ventura M.

Genome Biol. 2019 May 16;20(1):96. doi: 10.1186/s13059-019-1711-6.

7.

The Lactococcus lactis Pan-Plasmidome.

Kelleher P, Mahony J, Bottacini F, Lugli GA, Ventura M, van Sinderen D.

Front Microbiol. 2019 Apr 4;10:707. doi: 10.3389/fmicb.2019.00707. eCollection 2019.

8.

Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota.

Alessandri G, Milani C, Duranti S, Mancabelli L, Ranjanoro T, Modica S, Carnevali L, Statello R, Bottacini F, Turroni F, Ossiprandi MC, Sgoifo A, van Sinderen D, Ventura M.

Sci Rep. 2019 Apr 8;9(1):5755. doi: 10.1038/s41598-019-42257-z.

9.

Colonization of the human gut by bovine bacteria present in Parmesan cheese.

Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F.

Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w.

10.

Impact of a bathing tradition on shared gut microbe among Japanese families.

Odamaki T, Bottacini F, Mitsuyama E, Yoshida K, Kato K, Xiao JZ, van Sinderen D.

Sci Rep. 2019 Mar 13;9(1):4380. doi: 10.1038/s41598-019-40938-3.

11.

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Int J Syst Evol Microbiol. 2019 May;69(5):1288-1298. doi: 10.1099/ijsem.0.003306. Epub 2019 Feb 21.

PMID:
30789326
12.

Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom.

Lugli GA, Duranti S, Albert K, Mancabelli L, Napoli S, Viappiani A, Anzalone R, Longhi G, Milani C, Turroni F, Alessandri G, Sela DA, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e03065-18. doi: 10.1128/AEM.03065-18. Print 2019 Apr 15.

PMID:
30737347
13.

Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.

Lugli GA, Mangifesta M, Mancabelli L, Milani C, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Int J Food Microbiol. 2019 Apr 2;294:1-9. doi: 10.1016/j.ijfoodmicro.2019.01.011. Epub 2019 Jan 21.

PMID:
30711887
14.

Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Lugli GA, Mancino W, Milani C, Duranti S, Mancabelli L, Napoli S, Mangifesta M, Viappiani A, Anzalone R, Longhi G, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e02806-18. doi: 10.1128/AEM.02806-18. Print 2019 Apr 1.

PMID:
30709821
15.

Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1.

Erazo Garzon A, Mahony J, Bottacini F, Kelleher P, van Sinderen D.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01635-18. doi: 10.1128/MRA.01635-18. eCollection 2019 Jan.

16.

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Apr;21(4):1331-1343. doi: 10.1111/1462-2920.14540. Epub 2019 Mar 18.

PMID:
30680877
17.

Characterization of GH2 and GH42 β-galactosidases derived from bifidobacterial infant isolates.

Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.

AMB Express. 2019 Jan 19;9(1):9. doi: 10.1186/s13568-019-0735-3.

18.

Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages.

Hayes S, Duhoo Y, Neve H, Murphy J, Noben JP, Franz CMAP, Cambillau C, Mahony J, Nauta A, van Sinderen D.

Viruses. 2018 Nov 27;10(12). pii: E668. doi: 10.3390/v10120668.

19.

Characterisation of a Hydroxycinnamic Acid Esterase From the Bifidobacterium longum subsp. longum Taxon.

Kelly SM, O'Callaghan J, Kinsella M, van Sinderen D.

Front Microbiol. 2018 Nov 9;9:2690. doi: 10.3389/fmicb.2018.02690. eCollection 2018.

20.

Health benefits conferred by the human gut microbiota during infancy.

Ventura M, Milani C, Lugli GA, van Sinderen D.

Microb Biotechnol. 2019 Mar;12(2):243-248. doi: 10.1111/1751-7915.13334. Epub 2018 Nov 8.

21.

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation.

O'Connell Motherway M, Houston A, O'Callaghan G, Reunanen J, O'Brien F, O'Driscoll T, Casey PG, de Vos WM, van Sinderen D, Shanahan F.

Mol Microbiol. 2019 Jan;111(1):287-301. doi: 10.1111/mmi.14155. Epub 2018 Dec 2.

PMID:
30352131
22.

Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions.

Egan M, Bottacini F, O'Connell Motherway M, Casey PG, Morrissey R, Melgar S, Faurie JM, Chervaux C, Smokvina T, van Sinderen D.

Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10.

PMID:
30306201
23.

Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer.

Mangifesta M, Mancabelli L, Milani C, Gaiani F, de'Angelis N, de'Angelis GL, van Sinderen D, Ventura M, Turroni F.

Sci Rep. 2018 Sep 18;8(1):13974. doi: 10.1038/s41598-018-32413-2.

24.

Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria.

Hayes S, Vincentelli R, Mahony J, Nauta A, Ramond L, Lugli GA, Ventura M, van Sinderen D, Cambillau C.

Mol Microbiol. 2018 Dec;110(5):777-795. doi: 10.1111/mmi.14124. Epub 2018 Oct 30.

PMID:
30204278
25.

Bifidobacterium bifidum PRL2010 alleviates intestinal ischemia/reperfusion injury.

Duranti S, Vivo V, Zini I, Milani C, Mangifesta M, Anzalone R, Mancabelli L, Viappiani A, Cantoni AM, Barocelli E, van Sinderen D, Bertoni S, Turroni F.

PLoS One. 2018 Aug 30;13(8):e0202670. doi: 10.1371/journal.pone.0202670. eCollection 2018.

26.

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.

Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.

Sci Rep. 2018 Aug 24;8(1):12772. doi: 10.1038/s41598-018-31181-3.

27.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

28.

Comparative genomics and genotype-phenotype associations in Bifidobacterium breve.

Bottacini F, Morrissey R, Esteban-Torres M, James K, van Breen J, Dikareva E, Egan M, Lambert J, van Limpt K, Knol J, O'Connell Motherway M, van Sinderen D.

Sci Rep. 2018 Jul 13;8(1):10633. doi: 10.1038/s41598-018-28919-4.

29.

Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut.

O'Connell Motherway M, O'Brien F, O'Driscoll T, Casey PG, Shanahan F, van Sinderen D.

Sci Rep. 2018 Jul 13;8(1):10627. doi: 10.1038/s41598-018-29034-0.

30.

Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut.

Lugli GA, Mancino W, Milani C, Duranti S, Turroni F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Aug 1;84(16). pii: e00796-18. doi: 10.1128/AEM.00796-18. Print 2018 Aug 15.

31.

Comparative Genomics Reveals the Regulatory Complexity of Bifidobacterial Arabinose and Arabino-Oligosaccharide Utilization.

Arzamasov AA, van Sinderen D, Rodionov DA.

Front Microbiol. 2018 Apr 24;9:776. doi: 10.3389/fmicb.2018.00776. eCollection 2018.

32.

Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.

Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00706-18. doi: 10.1128/AEM.00706-18. Print 2018 Jul 15.

33.

Exopolysaccharide from Bifidobacterium longum subsp. longum 35624™ modulates murine allergic airway responses.

Schiavi E, Plattner S, Rodriguez-Perez N, Barcik W, Frei R, Ferstl R, Kurnik-Lucka M, Groeger D, Grant R, Roper J, Altmann F, van Sinderen D, Akdis CA, O'Mahony L.

Benef Microbes. 2018 Sep 18;9(5):761-773. doi: 10.3920/BM2017.0180. Epub 2018 May 4.

PMID:
29726281
34.

Extraction of the same novel homoglycan mixture from two different strains of Bifidobacterium animalis and three strains of Bifidobacterium breve.

Alhudhud M, Sadiq S, Ngo HN, Hidalgo-Cantabrana C, Ruas-Madiedo P, van Sinderen D, Humphreys PN, Laws AP.

Benef Microbes. 2018 Jun 15;9(4):663-674. doi: 10.3920/BM2017.0145. Epub 2018 Apr 26.

PMID:
29695179
35.

Determination of the cell wall polysaccharide and teichoic acid structures from Lactococcus lactis IL1403.

Vinogradov E, Sadovskaya I, Courtin P, Kulakauskas S, Grard T, Mahony J, van Sinderen D, Chapot-Chartier MP.

Carbohydr Res. 2018 Jun 15;462:39-44. doi: 10.1016/j.carres.2018.04.002. Epub 2018 Apr 12.

PMID:
29674103
36.

In Vitro Characteristics of Phages to Guide 'Real Life' Phage Therapy Suitability.

Casey E, van Sinderen D, Mahony J.

Viruses. 2018 Mar 30;10(4). pii: E163. doi: 10.3390/v10040163. Review.

37.

Structural studies of the cell wall polysaccharide from Lactococcus lactis UC509.9.

Vinogradov E, Sadovskaya I, Grard T, Murphy J, Mahony J, Chapot-Chartier MP, van Sinderen D.

Carbohydr Res. 2018 May 22;461:25-31. doi: 10.1016/j.carres.2018.03.011. Epub 2018 Mar 17.

PMID:
29573584
38.

Assessing the functionality and genetic diversity of lactococcal prophages.

Kelleher P, Mahony J, Schweinlin K, Neve H, Franz CM, van Sinderen D.

Int J Food Microbiol. 2018 May 2;272:29-40. doi: 10.1016/j.ijfoodmicro.2018.02.024. Epub 2018 Mar 1.

PMID:
29524768
39.

A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant.

Lavelle K, Murphy J, Fitzgerald B, Lugli GA, Zomer A, Neve H, Ventura M, Franz CM, Cambillau C, van Sinderen D, Mahony J.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02855-17. doi: 10.1128/AEM.02855-17. Print 2018 May 15.

40.

Bifidobacterium breve UCC2003 Employs Multiple Transcriptional Regulators To Control Metabolism of Particular Human Milk Oligosaccharides.

James K, O'Connell Motherway M, Penno C, O'Brien RL, van Sinderen D.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02774-17. doi: 10.1128/AEM.02774-17. Print 2018 May 1.

41.

Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin?

Mahony J, Lugli GA, van Sinderen D, Ventura M.

Appl Microbiol Biotechnol. 2018 Mar;102(5):2091-2099. doi: 10.1007/s00253-018-8795-x. Epub 2018 Feb 2. Review.

PMID:
29396587
42.

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.

PMID:
29395537
43.

Genomic diversity and distribution of Bifidobacterium longum subsp. longum across the human lifespan.

Odamaki T, Bottacini F, Kato K, Mitsuyama E, Yoshida K, Horigome A, Xiao JZ, van Sinderen D.

Sci Rep. 2018 Jan 8;8(1):85. doi: 10.1038/s41598-017-18391-x.

44.

Gene-trait matching across the Bifidobacterium longum pan-genome reveals considerable diversity in carbohydrate catabolism among human infant strains.

Arboleya S, Bottacini F, O'Connell-Motherway M, Ryan CA, Ross RP, van Sinderen D, Stanton C.

BMC Genomics. 2018 Jan 8;19(1):33. doi: 10.1186/s12864-017-4388-9.

45.

Comparative genome and methylome analysis reveals restriction/modification system diversity in the gut commensal Bifidobacterium breve.

Bottacini F, Morrissey R, Roberts RJ, James K, van Breen J, Egan M, Lambert J, van Limpt K, Knol J, Motherway MO, van Sinderen D.

Nucleic Acids Res. 2018 Feb 28;46(4):1860-1877. doi: 10.1093/nar/gkx1289.

46.

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

Bottacini F, Zomer A, Milani C, Ferrario C, Lugli GA, Egan M, Ventura M, van Sinderen D.

BMC Genomics. 2017 Dec 28;18(1):991. doi: 10.1186/s12864-017-4387-x.

47.

Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02249-17. doi: 10.1128/AEM.02249-17. Print 2018 Feb 15.

48.

Omics of bifidobacteria: research and insights into their health-promoting activities.

Bottacini F, van Sinderen D, Ventura M.

Biochem J. 2017 Dec 6;474(24):4137-4152. doi: 10.1042/BCJ20160756. Review.

PMID:
29212851
49.

Generation of Bacteriophage-Insensitive Mutants of Streptococcus thermophilus via an Antisense RNA CRISPR-Cas Silencing Approach.

McDonnell B, Mahony J, Hanemaaijer L, Kouwen TRHM, van Sinderen D.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01733-17. doi: 10.1128/AEM.01733-17. Print 2018 Feb 15.

50.

Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology.

Kelleher P, Murphy J, Mahony J, van Sinderen D.

Methods Mol Biol. 2018;1681:127-137. doi: 10.1007/978-1-4939-7343-9_10.

PMID:
29134592

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