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Items: 1 to 50 of 399

1.

Bifidobacterium breve UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate.

Püngel D, Treveil A, Dalby MJ, Caim S, Colquhoun IJ, Booth C, Ketskemety J, Korcsmaros T, van Sinderen D, Lawson MA, Hall LJ.

Nutrients. 2020 Mar 29;12(4). pii: E948. doi: 10.3390/nu12040948.

2.

Investigating bifidobacteria and human milk oligosaccharide composition of lactating mothers.

Lugli GA, Duranti S, Milani C, Mancabelli L, Turroni F, Alessandri G, Longhi G, Anzalone R, Viappinai A, Tarrachini C, Bernasconi S, Yonemitsu C, Bode L, Goran MI, Ossiprandi MC, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2020 Mar 19. pii: fiaa049. doi: 10.1093/femsec/fiaa049. [Epub ahead of print]

PMID:
32188978
3.

Three distinct glycosylation pathways are involved in the decoration of Lactococcus lactis cell wall glycopolymers.

Theodorou I, Courtin P, Sadovskaya I, Palussière S, Fenaille F, Mahony J, Chapot-Chartier MP, van Sinderen D.

J Biol Chem. 2020 Mar 13. pii: jbc.RA119.010844. doi: 10.1074/jbc.RA119.010844. [Epub ahead of print]

4.

The association between the maternal diet and the maternal and infant gut microbiome: a systematic review.

Maher SE, O'Brien EC, Moore RL, Byrne DF, Geraghty AA, Saldova R, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM.

Br J Nutr. 2020 Mar 4:1-29. doi: 10.1017/S0007114520000847. [Epub ahead of print]

PMID:
32129734
5.

A cell wall-associated polysaccharide is required for bacteriophage adsorption to the Streptococcus thermophilus cell surface.

McDonnell B, Hanemaaijer L, Bottacini F, Kelleher P, Lavelle K, Sadovskaya I, Vinogradov E, Ver Loren van Themaat E, Kouwen T, Mahony J, van Sinderen D.

Mol Microbiol. 2020 Feb 19. doi: 10.1111/mmi.14494. [Epub ahead of print]

PMID:
32073719
6.

The Impact and Applications of Phages in the Food Industry and Agriculture.

Mahony J, Casey E, van Sinderen D.

Viruses. 2020 Feb 13;12(2). pii: E210. doi: 10.3390/v12020210.

7.

Author Correction: Impact of a bathing tradition on shared gut microbes among Japanese families.

Odamaki T, Bottacini F, Mitsuyama E, Yoshida K, Kato K, Xiao JZ, van Sinderen D.

Sci Rep. 2020 Feb 5;10(1):2280. doi: 10.1038/s41598-020-59023-1.

8.

The infant gut microbiome as a microbial organ influencing host well-being.

Turroni F, Milani C, Duranti S, Lugli GA, Bernasconi S, Margolles A, Di Pierro F, van Sinderen D, Ventura M.

Ital J Pediatr. 2020 Feb 5;46(1):16. doi: 10.1186/s13052-020-0781-0. Review.

9.

Deciphering the Bifidobacterial Populations within the Canine and Feline Gut Microbiota.

Alessandri G, Milani C, Mancabelli L, Longhi G, Anzalone R, Lugli GA, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2020 Mar 18;86(7). pii: e02875-19. doi: 10.1128/AEM.02875-19. Print 2020 Mar 18.

PMID:
32005736
10.

The Impact of Primer Design on Amplicon-Based Metagenomic Profiling Accuracy: Detailed Insights into Bifidobacterial Community Structure.

Mancabelli L, Milani C, Lugli GA, Fontana F, Turroni F, van Sinderen D, Ventura M.

Microorganisms. 2020 Jan 17;8(1). pii: E131. doi: 10.3390/microorganisms8010131.

11.

Metabolism of biosynthetic oligosaccharides by human-derived Bifidobacterium breve UCC2003 and Bifidobacterium longum NCIMB 8809.

Ruiz-Aceituno L, Esteban-Torres M, James K, Moreno FJ, van Sinderen D.

Int J Food Microbiol. 2020 Mar 2;316:108476. doi: 10.1016/j.ijfoodmicro.2019.108476. Epub 2019 Dec 9.

PMID:
31874325
12.

Transcriptional control of central carbon metabolic flux in Bifidobacteria by two functionally similar, yet distinct LacI-type regulators.

Lanigan N, Kelly E, Arzamasov AA, Stanton C, Rodionov DA, van Sinderen D.

Sci Rep. 2019 Nov 28;9(1):17851. doi: 10.1038/s41598-019-54229-4.

13.

Bifidobacterial Distribution Across Italian Cheeses Produced from Raw Milk.

Milani C, Alessandri G, Mancabelli L, Lugli GA, Longhi G, Anzalone R, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Microorganisms. 2019 Nov 21;7(12). pii: E599. doi: 10.3390/microorganisms7120599.

14.

A Plasmid-Encoded Putative Glycosyltransferase Is Involved in Hop Tolerance and Beer Spoilage in Lactobacillus brevis.

Feyereisen M, Mahony J, O'Sullivan T, Boer V, van Sinderen D.

Appl Environ Microbiol. 2020 Jan 21;86(3). pii: e02268-19. doi: 10.1128/AEM.02268-19. Print 2020 Jan 21.

PMID:
31757821
15.

Bifidobacterium bifidum: A Key Member of the Early Human Gut Microbiota.

Turroni F, Duranti S, Milani C, Lugli GA, van Sinderen D, Ventura M.

Microorganisms. 2019 Nov 9;7(11). pii: E544. doi: 10.3390/microorganisms7110544. Review.

16.

Biodiversity and Classification of Phages Infecting Lactobacillus brevis.

Feyereisen M, Mahony J, Neve H, Franz CMAP, Noben JP, O'Sullivan T, Boer V, van Sinderen D.

Front Microbiol. 2019 Oct 16;10:2396. doi: 10.3389/fmicb.2019.02396. eCollection 2019.

17.

A microbiome reality check: limitations of in silico-based metagenomic approaches to study complex bacterial communities.

Lugli GA, Milani C, Mancabelli L, Turroni F, van Sinderen D, Ventura M.

Environ Microbiol Rep. 2019 Dec;11(6):840-847. doi: 10.1111/1758-2229.12805. Epub 2019 Nov 11.

PMID:
31668006
18.

Metabolism of the predominant human milk oligosaccharide fucosyllactose by an infant gut commensal.

James K, Bottacini F, Contreras JIS, Vigoureux M, Egan M, Motherway MO, Holmes E, van Sinderen D.

Sci Rep. 2019 Oct 28;9(1):15427. doi: 10.1038/s41598-019-51901-7.

19.

Bifidobacterial Dialogue With Its Human Host and Consequent Modulation of the Immune System.

Alessandri G, Ossiprandi MC, MacSharry J, van Sinderen D, Ventura M.

Front Immunol. 2019 Oct 1;10:2348. doi: 10.3389/fimmu.2019.02348. eCollection 2019. Review.

20.

A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in Lactococcus lactis.

Theodorou I, Courtin P, Palussière S, Kulakauskas S, Bidnenko E, Péchoux C, Fenaille F, Penno C, Mahony J, van Sinderen D, Chapot-Chartier MP.

J Biol Chem. 2019 Nov 15;294(46):17612-17625. doi: 10.1074/jbc.RA119.009957. Epub 2019 Oct 3.

PMID:
31582566
21.

Bifidobacterial Transfer from Mother to Child as Examined by an Animal Model.

Mancino W, Duranti S, Mancabelli L, Longhi G, Anzalone R, Milani C, Lugli GA, Carnevali L, Statello R, Sgoifo A, van Sinderen D, Ventura M, Turroni F.

Microorganisms. 2019 Aug 27;7(9). pii: E293. doi: 10.3390/microorganisms7090293.

22.

The impact of human-facilitated selection on the gut microbiota of domesticated mammals.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz121. doi: 10.1093/femsec/fiz121.

PMID:
31344227
23.

Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions.

Hayes S, Mahony J, Vincentelli R, Ramond L, Nauta A, van Sinderen D, Cambillau C.

Viruses. 2019 Jul 9;11(7). pii: E631. doi: 10.3390/v11070631.

24.

Implementation of Transposon Mutagenesis in Bifidobacterium.

Ruiz L, van Sinderen D.

Methods Mol Biol. 2019;2016:51-62. doi: 10.1007/978-1-4939-9570-7_5.

PMID:
31197708
25.

Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution.

Duranti S, Lugli GA, Milani C, James K, Mancabelli L, Turroni F, Alessandri G, Mangifesta M, Mancino W, Ossiprandi MC, Iori A, Rota C, Gargano G, Bernasconi S, Di Pierro F, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Oct;21(10):3683-3695. doi: 10.1111/1462-2920.14705. Epub 2019 Jun 20.

PMID:
31172651
26.

Comparative genome analysis of the Lactobacillus brevis species.

Feyereisen M, Mahony J, Kelleher P, Roberts RJ, O'Sullivan T, Geertman JA, van Sinderen D.

BMC Genomics. 2019 May 23;20(1):416. doi: 10.1186/s12864-019-5783-1.

27.

Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches.

Lugli GA, Milani C, Duranti S, Alessandri G, Turroni F, Mancabelli L, Tatoni D, Ossiprandi MC, van Sinderen D, Ventura M.

Genome Biol. 2019 May 16;20(1):96. doi: 10.1186/s13059-019-1711-6.

28.

The Lactococcus lactis Pan-Plasmidome.

Kelleher P, Mahony J, Bottacini F, Lugli GA, Ventura M, van Sinderen D.

Front Microbiol. 2019 Apr 4;10:707. doi: 10.3389/fmicb.2019.00707. eCollection 2019.

29.

Ability of bifidobacteria to metabolize chitin-glucan and its impact on the gut microbiota.

Alessandri G, Milani C, Duranti S, Mancabelli L, Ranjanoro T, Modica S, Carnevali L, Statello R, Bottacini F, Turroni F, Ossiprandi MC, Sgoifo A, van Sinderen D, Ventura M.

Sci Rep. 2019 Apr 8;9(1):5755. doi: 10.1038/s41598-019-42257-z.

30.

Colonization of the human gut by bovine bacteria present in Parmesan cheese.

Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F.

Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w.

31.

Impact of a bathing tradition on shared gut microbe among Japanese families.

Odamaki T, Bottacini F, Mitsuyama E, Yoshida K, Kato K, Xiao JZ, van Sinderen D.

Sci Rep. 2019 Mar 13;9(1):4380. doi: 10.1038/s41598-019-40938-3. Erratum in: Sci Rep. 2020 Feb 5;10(1):2280.

32.

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Int J Syst Evol Microbiol. 2019 May;69(5):1288-1298. doi: 10.1099/ijsem.0.003306. Epub 2019 Feb 21.

PMID:
30789326
33.

Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom.

Lugli GA, Duranti S, Albert K, Mancabelli L, Napoli S, Viappiani A, Anzalone R, Longhi G, Milani C, Turroni F, Alessandri G, Sela DA, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e03065-18. doi: 10.1128/AEM.03065-18. Print 2019 Apr 15.

34.

Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.

Lugli GA, Mangifesta M, Mancabelli L, Milani C, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Int J Food Microbiol. 2019 Apr 2;294:1-9. doi: 10.1016/j.ijfoodmicro.2019.01.011. Epub 2019 Jan 21.

PMID:
30711887
35.

Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Lugli GA, Mancino W, Milani C, Duranti S, Mancabelli L, Napoli S, Mangifesta M, Viappiani A, Anzalone R, Longhi G, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e02806-18. doi: 10.1128/AEM.02806-18. Print 2019 Apr 1.

36.

Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1.

Erazo Garzon A, Mahony J, Bottacini F, Kelleher P, van Sinderen D.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01635-18. doi: 10.1128/MRA.01635-18. eCollection 2019 Jan.

37.

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Apr;21(4):1331-1343. doi: 10.1111/1462-2920.14540. Epub 2019 Mar 18.

PMID:
30680877
38.

Characterization of GH2 and GH42 β-galactosidases derived from bifidobacterial infant isolates.

Ambrogi V, Bottacini F, O'Sullivan J, O'Connell Motherway M, Linqiu C, Schoemaker B, Schoterman M, van Sinderen D.

AMB Express. 2019 Jan 19;9(1):9. doi: 10.1186/s13568-019-0735-3.

39.

Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages.

Hayes S, Duhoo Y, Neve H, Murphy J, Noben JP, Franz CMAP, Cambillau C, Mahony J, Nauta A, van Sinderen D.

Viruses. 2018 Nov 27;10(12). pii: E668. doi: 10.3390/v10120668.

40.

Characterisation of a Hydroxycinnamic Acid Esterase From the Bifidobacterium longum subsp. longum Taxon.

Kelly SM, O'Callaghan J, Kinsella M, van Sinderen D.

Front Microbiol. 2018 Nov 9;9:2690. doi: 10.3389/fmicb.2018.02690. eCollection 2018.

41.

Health benefits conferred by the human gut microbiota during infancy.

Ventura M, Milani C, Lugli GA, van Sinderen D.

Microb Biotechnol. 2019 Mar;12(2):243-248. doi: 10.1111/1751-7915.13334. Epub 2018 Nov 8.

42.

A Bifidobacterial pilus-associated protein promotes colonic epithelial proliferation.

O'Connell Motherway M, Houston A, O'Callaghan G, Reunanen J, O'Brien F, O'Driscoll T, Casey PG, de Vos WM, van Sinderen D, Shanahan F.

Mol Microbiol. 2019 Jan;111(1):287-301. doi: 10.1111/mmi.14155. Epub 2018 Dec 2.

PMID:
30352131
43.

Staying alive: growth and survival of Bifidobacterium animalis subsp. animalis under in vitro and in vivo conditions.

Egan M, Bottacini F, O'Connell Motherway M, Casey PG, Morrissey R, Melgar S, Faurie JM, Chervaux C, Smokvina T, van Sinderen D.

Appl Microbiol Biotechnol. 2018 Dec;102(24):10645-10663. doi: 10.1007/s00253-018-9413-7. Epub 2018 Oct 10.

PMID:
30306201
44.

Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer.

Mangifesta M, Mancabelli L, Milani C, Gaiani F, de'Angelis N, de'Angelis GL, van Sinderen D, Ventura M, Turroni F.

Sci Rep. 2018 Sep 18;8(1):13974. doi: 10.1038/s41598-018-32413-2.

45.

Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria.

Hayes S, Vincentelli R, Mahony J, Nauta A, Ramond L, Lugli GA, Ventura M, van Sinderen D, Cambillau C.

Mol Microbiol. 2018 Dec;110(5):777-795. doi: 10.1111/mmi.14124. Epub 2018 Oct 30.

PMID:
30204278
46.

Bifidobacterium bifidum PRL2010 alleviates intestinal ischemia/reperfusion injury.

Duranti S, Vivo V, Zini I, Milani C, Mangifesta M, Anzalone R, Mancabelli L, Viappiani A, Cantoni AM, Barocelli E, van Sinderen D, Bertoni S, Turroni F.

PLoS One. 2018 Aug 30;13(8):e0202670. doi: 10.1371/journal.pone.0202670. eCollection 2018.

47.

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.

Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.

Sci Rep. 2018 Aug 24;8(1):12772. doi: 10.1038/s41598-018-31181-3.

48.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

49.

Comparative genomics and genotype-phenotype associations in Bifidobacterium breve.

Bottacini F, Morrissey R, Esteban-Torres M, James K, van Breen J, Dikareva E, Egan M, Lambert J, van Limpt K, Knol J, O'Connell Motherway M, van Sinderen D.

Sci Rep. 2018 Jul 13;8(1):10633. doi: 10.1038/s41598-018-28919-4.

50.

Carbohydrate Syntrophy enhances the establishment of Bifidobacterium breve UCC2003 in the neonatal gut.

O'Connell Motherway M, O'Brien F, O'Driscoll T, Casey PG, Shanahan F, van Sinderen D.

Sci Rep. 2018 Jul 13;8(1):10627. doi: 10.1038/s41598-018-29034-0.

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